GgaINT0097026 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4041496-4042426:+
Coord C1 exon
chr2:4041496-4041641
Coord A exon
chr2:4041642-4042311
Coord C2 exon
chr2:4042312-4042426
Length
670 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
AACCTGACCCCCGTCCCCAGCTT
3' ss Score
5.77
Exon sequences
Seq C1 exon
GCCATATACGAGCGGCTCTTCGGATGGATCGTGGGGCGCATCAATGCCAGCATCACCGCACGTGGTTACGATGTCCGGCAGCATGGCAAGAGCACCGTCATTGGCGTCCTTGACATCTATGGCTTCGAGATCTTTGACACCAACAG
Seq A exon
GTGACACGGACCCCACGCTGGAAGGGGATGGGGAATGGGGACACGTGATGGGGGTGGAGGAACAGGTGGATGGGATGGAATGGATATGTAAAGAAGATATGGGATGGGAAAGACACATGGAGGAGATGAGACTTGGAGGGGATGTGAGGGGACTGGGGATGAGTTGGATGTGGTTGAGACAAGGGGACACCTGGGAGGGGCACGTGGAGGGGACAGAGTTTGGGAGTAACACACGGAGCAGATGGCTGGGGAAGGACACATAGAGGGGATGGGATCCAAGAGGGACAAGTGAAGAGGACAGGGGGACACCTGGGAGGGACATGTGGAAGATGTTGGGGATGGGAAGGACATGTGAAAGGGGTAGAGACACCTGGGGGGGACACGTGGGTGGGACAGAGCTTGGGAGGGACATGTGGAAGGGATGGGGGATGGGAAGGACATGGGGAAGGGAGATGGACACCTGGGAGAGACATAAGGAGGAGATGGCTTGGGAAGGACATATAGAGGGGATGGGACCCAGGAGAGACATGGAGGGGACAAGGCTTGGGAGGCACAACTGGAGGGGATGATGTGAGAAGGGCATATGGAAAGGTGGGACCAGAGTGGCATGGTGGCCAGGGGGCATGGTGTGGGGCCAGGTGCCAGCGGCCAACCTGACCCCCGTCCCCAG
Seq C2 exon
CTTTGAACAGTTCTGCATCAACTACTGCAACGAGAAGCTGCAGCAGCTTTTCATCGAGCTCATCCTGAGGCAGGAGCAAGCGGAGTACCAGCGAGAGGGCATCACCTGGCAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATATACGAGCGGCTCTTC
R:
ATTCTGCCAGGTGATGCCCTC
Band lengths:
261-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]