RnoINT0097157 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86790472-86791479:-
Coord C1 exon
chr14:86791334-86791479
Coord A exon
chr14:86790587-86791333
Coord C2 exon
chr14:86790472-86790586
Length
747 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGCCCCGCCCTACCCCCCAGCTT
3' ss Score
5.63
Exon sequences
Seq C1 exon
GCAATGTACCAGCGACTGTTTGAGTGGGTTGTGAACAAGATCAACAGCATCATGGAACCCCGGGACCGGGACCCTCGGCGTGATGGCAAGGACACTGTCATTGGGGTGCTGGACATCTACGGCTTTGAAGTATTCCCTGTCAACAG
Seq A exon
GTAGGCAAACCAATCAACCCCTTCTGTACCTTTGACCCTGTAACCACCGTGGCTACCAGAAACTTTGGTTGGTCTAGAAGGAAGAAATGTTTGGCTTTTCCTGCTGGTCCTTGAGCATTCTTTTTTTTTAAAAAAAAATTGTTCATTTATTATATATAAGTACACCGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCGGTTGGGGCTCTTAACCACTGAGCCATCTCTCTAGCCCCAGTCCTTGAGTATTCTAAGTTTGCCTTATCTGTGTCCCCAGCCAGTTAGGGAACTTGATGGCAAGCAAAATTTGGGGGCTCATTCACCTCCCCTATCATTTTTTGTTTGCTTGGTTTTTTTTGTTTGTTTGTTTTTGTTTTTTGGGACAGGATTCTCCATGTAACAGAGTCCTGGCTGTCCTGGACTTGCTTTGTAGACCAGGCTGATCTTGAACTCACAGAGATCCGTCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCATGTGCCACCACACTGCTTCTCTGGATGGTGGCTCCCAAGTCCATTCTAGGGCAGGGGTGGTAGGGCAGAGAGTTCAGACCCCACAGTGCAGAGGGCAGGAGAAAGGCAGCTGCCCATCACTACCTCCCTCCCAGAGAGTGAAAACCCCTCTAAGGCCCCGCCCTACCCCCCAG
Seq C2 exon
CTTTGAGCAGTTCTGTATCAACTACTGCAATGAGAAGCTCCAGCAGCTCTTTATCCAGCTGATTCTGAAGCAAGAGCAGGAGGAGTATGAGCGAGAAGGCATCACCTGGCAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCGACTGTTTGAGTGG
R:
GCTCTGCCAGGTGATGCC
Band lengths:
255-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]