DreINT0017922 @ danRer10
Intron Retention
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7286138-7286483:-
Coord C1 exon
chr2:7286322-7286483
Coord A exon
chr2:7286233-7286321
Coord C2 exon
chr2:7286138-7286232
Length
89 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACCTGTTTTCCTGCTTTAAGGAG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GCTGCCAGTAACTCCATGCTCCTGCAGAGGGAGGCGTGTGCGCTGGCGGCTCAGCCCTCCGCTGGGGTCAAGTGGTCTTCAGGAGCCACAGTATCTAGTGAGCAGCTCAGCCGAGAGCTCGATCACGTAGAGCGAGAGATCAGAACTCGGGAGATCGCCATG
Seq A exon
GTGAGTTGAAGAGCTATGGATGAACGTCTGCATTTATTTATTCTCGTATGAGGAGCGTGTGCTGATCCAACCTGTTTTCCTGCTTTAAG
Seq C2 exon
GAGAACCAGGTGGCTCACGAATACAAGCTGAAGGCCATTGAGAACGGGCAGCCTGACCATAAAGCCCAACTGGAGGAACTCTCCTTAGCACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182:ENSDART00000139703:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTGGTCTTCAGGAGCCA
R:
AGAGTTCCTCCAGTTGGGCTT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]