DreINT0021997 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19173352-19173602:+
Coord C1 exon
chr1:19173352-19173455
Coord A exon
chr1:19173456-19173539
Coord C2 exon
chr1:19173540-19173602
Length
84 bp
Sequences
Splice sites
5' ss Seq
TTTGTATGT
5' ss Score
2.51
3' ss Seq
TCTGTCTATGGCTTGTGTAGGAG
3' ss Score
6.61
Exon sequences
Seq C1 exon
TTCTGTCTCCCTATACCTTTGCGATTGGAGACACTTCATCATTCCAGCCATATACTCACGGAGGATTCTTCCGCTTGGTCAAGATCCCCAAAACCTTCAGCTTT
Seq A exon
GTATGTTAACACCACCTTCAGTTCATTTTATTAATAGTGGAGAAGCATAACAATTCACTTTTCCTCTGTCTATGGCTTGTGTAG
Seq C2 exon
GAGAAGATGGAGCAACAGTTATCTGATCCTCGGCTCCTTACTCCAGACTTCAGCAAACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTCTCCCTATACCTTTGCGA
R:
CTCTGGTTTGCTGAAGTCTGGA
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]