DreINT0022012 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19186927-19187130:+
Coord C1 exon
chr1:19186927-19186978
Coord A exon
chr1:19186979-19187066
Coord C2 exon
chr1:19187067-19187130
Length
88 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GTGTTTCCCTTCTATTTTAGGTC
3' ss Score
13.77
Exon sequences
Seq C1 exon
GCATTACAACTACTGCACTCATTTCCATTGGACACACGGCTAAAAGATGGCA
Seq A exon
GTAAGTAATCTTCACTCCTGCGGAAGAATTCAAAAAGTGAGAAAAATCGATGTCTTTGCCCAGCTGAAGTGTTTCCCTTCTATTTTAG
Seq C2 exon
GTCTGTTCTGGCAGTCTCCAAAACGACCACCTTCTCCCATAGACTTTGACCTCAGTGACCCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(13.2=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTACTGCACTCATTTCCA
R:
AGCGGGTCACTGAGGTCAAAG
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]