GgaINT0070359 @ galGal3
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53139155-53139366:-
Coord C1 exon
chr4:53139315-53139366
Coord A exon
chr4:53139219-53139314
Coord C2 exon
chr4:53139155-53139218
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TAAGTCTGTCTTCTAACCAGGTT
3' ss Score
7.59
Exon sequences
Seq C1 exon
GCTCTTCAGCTTCTTCATTCGTTTCCTCTTGATACACGATTAAAAGATGGAA
Seq A exon
GTAAGTACAAACACCTCCGTGTGCCTCCTGTGAATTCATGGCTTGTGTCATGTGTTGCTGTTCTAGGACTTCATCTTAAGTCTGTCTTCTAACCAG
Seq C2 exon
GTTTGTTCTGGCAGTCACCAAAGAGGCCACCTTTCCCAGTGAAGTTTGATTTTAACGATCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(11.9=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCAGCTTCTTCATTCGT
R:
ATCGTTAAAATCAAACTTCACTGGGA
Band lengths:
111-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]