HsaINT0176085 @ hg19
Intron Retention
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68497426-68497626:-
Coord C1 exon
chr4:68497575-68497626
Coord A exon
chr4:68497490-68497574
Coord C2 exon
chr4:68497426-68497489
Length
85 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TATTTGTATCTTTTTGCCAGGTT
3' ss Score
7.56
Exon sequences
Seq C1 exon
GCTCTTCAGCTTCTTCACTGTTTCCCTCTGGACATACGATTAAAAGATGGCA
Seq A exon
GTAAGTATAAATGTTGAGAATAAATTTTAATGACATTTATTACTGGCTACATACATTGAAAATGATATTTGTATCTTTTTGCCAG
Seq C2 exon
GTTTATTTTGGCAGTCACCAAAGAGGCCACCCTCTCCAATAAAATTTGATTTAAATGAGCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-UBA6:NM_018227:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(12.3=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCAGCTTCTTCACTGT
R:
AATCAAATTTTATTGGAGAGGGTGGC
Band lengths:
103-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)