MmuINT0168855 @ mm10
Intron Retention
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86128676-86128879:-
Coord C1 exon
chr5:86128828-86128879
Coord A exon
chr5:86128740-86128827
Coord C2 exon
chr5:86128676-86128739
Length
88 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
ATATTTTATCATTTTACTAGGTT
3' ss Score
7.67
Exon sequences
Seq C1 exon
GCTCTGCAGCTTCTTCACTGTTTTCCTCTTGAGACAAGACTAAAAGATGGCA
Seq A exon
GTGAGTATAACCATTGAGAAAAGATTGTAATATGAAATACTATATAAGACCTATATTTATTAAAAATGATATTTTATCATTTTACTAG
Seq C2 exon
GTTTGTTTTGGCAATCACCAAAAAGGCCGCCTTCTCCAATAAAATTTGATTTAAATGAACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898:ENSMUST00000039373:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0213416=UBACT=PU(12.1=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCAGCTTCTTCACTGT
R:
AATCAAATTTTATTGGAGAAGGCGGC
Band lengths:
103-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types