DreINT0022140 @ danRer10
Intron Retention
Gene
ENSDARG00000099133 | UNC5C (2 of 2)
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr5:6969482-6972152:+
Coord C1 exon
chr5:6969482-6969646
Coord A exon
chr5:6969647-6971481
Coord C2 exon
chr5:6971482-6972152
Length
1835 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
ATTAATACTTTATTTTTCAGACT
3' ss Score
7.65
Exon sequences
Seq C1 exon
GAGGTTCTGTTCTCTCAGGTGTGGAGCGGCTCGGTGCGGCGGCTGCACTGCTCTTTCACTCTGGAACGTCAGGCTCTGAGTGTGTGTGAGTTCTCCTGTAAACTCTGTGTGCGACAGGTTGAGGGAGAAGGCCAGATCTTCCAGCTCTACAGCACACTGAGTGAG
Seq A exon
GTACAGTTACACACTAATGCACACACACACACACACACACACACACACACTCACACACACTCACTGATGAGGATCACATCATCTACAGTATATTTGTTCACAGTTTGAACAACTTACAACAACCTTACAACCACATACTGCACTGTAACAACCACCTACAACACCCATCAGTTCTACAGTAACACACTCACTGATCAGGATCACATCTATCCATCCTTTTATCTATCCATCCATCCTTTTAAGCAGCCATTCATCTATCCATCCAACAGCCATCTTTTTACCTATCCATCCATCCATCCATCCATCCATCAATTTATCCATCCATCTATCCATTTATCTATCCATCCATACATTCATTCTATCAACCCATCCATCCATCCATCTTTCTATCCATCTATACATCTAGCCATCCATGTGTCCATCTGTCCATCTATTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTTATCCATACATTCATTCTATCAATCTATCCATCCATCCATCTATCCATCTAGCCATCCATGTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCAATAATTTATCCATCCATTCATCTATCATCCATCCATCCATTTATCCATACATTCATTCTATCAATCTATCCATCCATCCATCCATCTATCTATCTATACATCTAGCCATCCATGTTTCCATCTATTCATCCATCTATTCATCCATCTATTCATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAATAATGTATCCATCCATTTATCTATCATCCATCCATCCATCCATCCATCCATTTATCCATACATTCATTCTATCAATCTATCCATCCATCCATCTATCCATCTAGCCATCCATGTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATACATAAATTCTATCAATCCATCCATCTATACATCTAGCCATCCATGTGTCAATCTATTCATCCATTCATCCAATAATGTATCCAACAATTTATTCATCCATACATACATACATACATACATCCATACATACATCCATCCATACATACATACATGAATACATTCATTCTATCAATCCATCCATCCATCTATTTATCCATCTATACATCTAGCCATCCATGTGTACATCTATTCATCCATCCACCCATCCATTTATCCATCCATCCATTCATCCATCCATCCAGCAATTATTAGGATTATTTATTTCTTGAGTCACTACCTCTGCTTTTTTAAGAAATGGAAAAAAACTAACTATTAGCTTTCCCAATTAATGCAAGTATTAATACTTTATTTTTCAG
Seq C2 exon
ACTGTGTTGCATGGTTTTACAGGATTGACATTTTACCGGTGGCTGTTTACCTTATAGCAGCTCACTCATCTCCGCTCTTCAGACTGTGCGTTTGAGTCTCTGGAGCAGCAGTGGTTTGTGTTTAATCCGTCTGAAGCTCAGCACTCATCTGTCTACACATCACACAGACTTTTCAGTGTCCTTCTCTCCGCTCCGCACTTTAATCAGTGTGTGTAATTAAGAACAGCACAGATTCATTAACATTACAGATGAATTCTGTCTTCAGAACTTACACAAGAAGTTAGATTTGTGCAACACTTTACCAACTACACTACACTGTAAGAATTATCTGTTAATGGAGAGTTTCCGTATTTCATGATTCACAAGTGTTTTCTGATTGTTTATGGTTGTGCATGGCATTATGGGATGTCGATCTCTGCTCTGGTTACTTTTGATGTTGAAAATTAAACTCTACAGCTTAACAAAGTGACTTTTTTTGACAGTTTGCTATAGTGTAATGCATAAGAAATATTATACAGAGAAATAAATCTGTAAAATAACAGAAAATGTACTGCAGTTAACTACAAGGGAACAACAACCCAGACAATATATCACTTTAAACTATTAAAGATGTTCCTAAAAGTCACTTTGCTTTAGATTCTTTCGATGTTAAAAGTTTTTAGAAGAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099133:ENSDART00000164862:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCTCTCAGGTGTGGAGC
R:
AGCGGAGAGAAGGACACTGAA
Band lengths:
351-2186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]