MmuINT0170603 @ mm9
Intron Retention
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 homolog C (C. elegans) [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141480995-141490643:+
Coord C1 exon
chr3:141480995-141481159
Coord A exon
chr3:141481160-141490464
Coord C2 exon
chr3:141490465-141490643
Length
9305 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AAGTTGTGTCGTTCCTACAGGAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GAAATTCCATTTTACCACATCTGGAGTGGCTCTCAAAGAAACCTCCACTGCACCTTCACTCTGGAAAGACTCAGCCTAAACACAGTGGAACTGGTTTGCAAACTCTGTGTGCGGCAGGTTGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGTACTGTGTCAGAG
Seq A exon
GTAAGACACTCTTAGGATCCTGGAGAATATCCTGGGAAAGAATGGTTAGGGGTGGGCAAAGCCTTTCTTGTGTAAATATCATGGAAGACGTCCCAACCTGTTCCTATGTCCTTAATGCAACTGGGAAAGGAATTGTTTTTTCCAAAATAAGTTTTCTTATGCCATCCATTTAATATTCATACTATAACTTACAAAAAGAGATCTGAGAACAAGACATGACAATAAATCCTCGTAATCCCCAACACTCCTGAGAATTACTTCAAACCCAAAACTACCTCAGCCTAAGTTGTGAGTTGTTAGGCCAGCCATGGCCACATAGTGAGACCACATTTTAACACACTACAAGAAAAACACAATTGAGATCTGAACTTCAATTGCAAGGTTTTAGTAGCATGTACATGGCACTTTCCACCAGCATTCTTCATCTGCCCACCTTTCTCTCACAGGGACTTCTGTCATTTTGTCATAATGGAATGAAGGAAAAGAGGGGTGCCTGTTACCCCACTTTGCACCCATATTGAAGGGAGAAACTTTTAGGTCTCCTTTCTTTCTCTAACCTCCAAATATTAGAGAAGATGTCCTTTACCCCAGAGTTTGGGAGATACTCCAGGAATGGAAGAAAATCTATACTCTCCATAGTGGTCATTTTTGCCTTTGTCCACTATGACTTTCACACACGCAGCTGGGCATTTTTATACATTCATATTCCAGCAGTAACAATAGTTGCTGTTATTTCAAACCTCTCTGTAAGGAAATAGGAGGTACCCATGACCTTATCTGTCCTCTTTGGATGCAAAGACTATGGTTTGAAAAGCGGTAAGCCTTCGTGTAGGAGGAACAAAGGAGTATGAATAAGCCATTTGCTCAGAAAGCTGCCCTGTGAGGCCCCTTGGAGCTCAGCTCCATGCTGCTGTGTGAGCAAGCAACAAAGCCCATGCACACTACTACAGCCAGCAGAGTATGATTTAAAACACTCTTTTTTTTGTCTTCTGCTTGGAGATGACTGCAATGTCAGTCTGTTCAGCCTGTCTTGTGCCACATGTCCTATTTAAAGATGATCTTCCTTAGCAAACAGAGGCAGAGGTGGAGGGGGGGAAGCCTGTGAGCTCATTGAAGCTCCCATCTTCTTTCCCACAGCCTGTGAGGCGCAGCGATCCTCTCCTCCTGTAGTTTCATGAGACTTTTGACTCATAAACAACTTTAGTCACAGACCTCGGTGACATTCATAAGGAATGATCTCTGTGTCAGGGTGCCATGGCAACCGCCGGGCCTTTGGATGCACAGCCCTATCTCCCAGGCACACAGCACCACCCCTGCTGGCTTCGGAGGGTGTTTTCACTTTCCTGGCCCAGCAGGTCTGCAAAGTTCAATAACCACCCAGCTCCTGTCACAACAAAGGCTGTGGAATTTTGGAGGGGGGTGAGGAGTCTGGCCCTTTGATGCGTGCTTTCTGTTCAGCATGGACATTTGCTGCTCCCTGAAAAGGTGGATCAGATGCAGCCACAAAGAAATGAGAGCCGCTCCGAGTTCTCCCCCCACCAGGGAGGGCTGCTAGCTCCTCACACAGAAAGGGCAGTTTTGCAAAGTGTGATCACAACTTAAGGACTCCTTTCTGGTGCCAACACAGAGAAAAGATGATTGCTTTTGCAACTTGGCAGTCGGCTCAGAGGCCAGCCCTGTAGTCACGCGGCAGGCATTTGCCCATGCGTGACAGACAAGCACATGAAACTCAGGATGGAAGAAATGACCAGACTGGGAAAAAACGCTGGGGATTCGGGAGCCCTCTATGGCTTGTACTTCTGGGTTCCAGCAATCCATCGCAGTGGTTATCAATTGAATGCAGGTTGGGTTCTGGAAGTGGGAGGAGGTTTCTGGTACTGGTGCTGATGCTGCAGCAATGTGAGGCTCTAAGCAGAATTGTGGGCTCTGAGGAGTCCAGTGACCCAAGTCCTCATCAAAGACTGAGAAGTGGCCCAGTATGATTCAAAAGTTGGTATAAAGAAAAGTCTTCATTTGTGGTTATTTTCTTCTGAGTTGTGCTCCTTCCATCACAAAGCAAGCTAACAGAGTCTAAGGGGTTCTAACTCCAACGTCATATCCCCAGAGAATTATCAGTCTTGTTTAGAATACATTGGTTTTTTTTCCCCCTTTTCCCACTAGTGACCTACTAAGGAAAGTCACTTACCAGTCACTTATAAAATCACGTAACTTAGGGCCTCTAGAGCCCAGGGTAGAACCTTCGCCCACCATAGGGACCAGTCTGGACCAGGCATGTATACTCAAGAGCCACCACCTGTCCTTCTGTTCCCCTTACCAGAGGCCCCTAAAAGCCTCTCGCTGAAGAAAAGAGGTTTCAGAAGGAAAAATACCTAGAAAACTAAAATGTTGCTGTGACTGGATGTCACGATGAAAATTATGGAAGATATTTCATTTTTTTGGTTTCTTTAGATAGGGGTGGGGTAAGAAATTTGTCCAAAGTGAAAATATGGTACAGAGAAGAAAGGAAAACTTGATAGGGGTGGGGTATTGCAAGCATTGCCTCTCTGATCAGTGGGATCCATTTGCCAGCTTAAGCATCACATGTCCTGTTCTCAAAATCCAAGTTAAAGCTCAGATCGAACAGATGGTTCAGAGCACTTTCTGTTCTTGCACAAGACCTGGGTATAGCTCCAGTATCCATATTGCAGATCACAACTATCTGACTTCGAGATCAGTCGGGTCTAGTGTGAGTTCTGGGATAGCCAGGGCTAAACAGAGAAACCCTGTCTCAAAAAGCCAGAAAGCAAGAAAAGAAAAGAAAGAGGGAGGAAGAGACAGAGTGACAGAGAAAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATCTTAAGATGTAGATGGGGGTTATAGCTTCCATAAACTATATGAAGAAAACTACCACCCAACTAAATTTGGGGGTTGATCACCCAGAACAGATGTTTGGTTAATGCTGAAAAATCATATGGTTAACTAAGAAAATTATAACATCAAAAACAGATGGTTCCGCTATCATAAAAGATTATTGTAATAAACATTCTGTGAAAGTAATCTCTACTTTTACCTGGAAGTAAAGGAAAAGCCGATAGAAAATGAAAATTACTACATGAAATGTGAACATAAATGTATGCGTGCATTTTCTCTGATTACCTTCAATGTATTAAAGTATGCTACCAGCCATCCAATAAGTGTAGTACAAAGTTTGTTTCATAGACTCCCAAGACATAGGCAGAGTAGCCAAGTTAGCAGTTAGGGAAATGTCCACATGCAATGGTACTGGTTCCTTACTCAACAAGACAGGGATGAGCTGAGTGTATGAGAGTTTCCTGAGACTCATATCTATTTTAAACTAGCCTTTCTTCATCCTCAGGGTTTAACCAATGAGATAAATCAAGCCCTCATTCACATTTAGTTAGAAGGAAACAAGAATTCCACTCTGCAGGTAGAATTATTTATCAGGAATGGTTTTCCTGTCTCCCCATCATAGCAAAAACTGCCTGCTCCCATTTAGGCAAACAGTGACCGTGTAGCTTCAATGTGCCATGTGAATATTACAGGGAATCTGTTGATAAAACAACAAATAAAATACTCTGCCTAAACAGAAATTAGGAGAGCAAAGTCCATTCAGTCTGCATAGGGCTGAACCTGAGGAACACTGAAGAGCTATGGCCATGTCCTGGAGTCCTGGCCGCCTCCAAGTAGGGTATCTTAGCATATATAAAGAAGGCTATTGTAGCACATGGCCTTGGGCCAAATTTTAAGGCATGTGCAGAAGATACTAAAGGAAAAGGCCTGCCAGAGGGCTTCTCCTAGAAGTGGTGGTAGGAATGAGAAGCAGGAGAGTGTGTCAGCGCTCAATCAGGGCCAGTACCACCAAGATGGCAGACTGAGAAGTCGGGGGAGCAGAGTTGTAGGGGTTCCTGACTCCATGTCAGAACTGGAGCCCAGAGTCCCACATAGCCCTAGGTGGGGGCTATGCATATCGCTCACTGAACAAAACTAGGGGCTAGACTTTTAAAGAAAAACTAAGTTCAATTCTTTTGACACTATTCCACAGTTTTCATGAGAGGGCAGTTTCTGAATGAAGCTGAATCTATGATACCAGCATTGCTTTTAAGAAAATTTGACATGCAACAGCTAAAGGCCAAAACCTATGACAAAATAGACATAAAAACTCTCAACAAAATTCTGATCAATAGGTTTCATCCTAAGCATGAAAGGATGGCTTAATACATGCAAACTAAACACCATGTATCGTATGTACAGAATGATGAATATAAATTATATGAGCATCCATGATATAGGAAAGACACAATACAATTCAACAACTATAGATGTTAAAAACCTTGAACATACTAAATATTGAAGAAGCATACATACATGAACATACATGAACATAAAATATAATGTATGGTAAACCCACAGCTTTATCATACTGAGAAGGAAAAAGCTGAAGGTAGTTTCCTTTAGGACAGGGACACATGTATAAGTATCCACCCTCATATCTCTTACTAAGAATAATACAAATATACAGAGCAATTGACAAGAGAAAGACAAGACAGACAAATTGGAAAGAAAAAAATTAAAGTCTCTCTTTATGCACATGGTATGATCTATCCATAGAAAAATAGATCCTAAAGAATATAATAATTGATTATTCCAAAGTCACATACAAAGTCAACTTTCAAAAGTCATTAGCTTATTTACATATCAAAGATGAATTGTTGAGAGAACTCATGACTACAATGGTGTTTACAGTAGGGCAGAGAAGGAAAATATACCTTGGAAAACCTTAATAGAGGCAGAAAAATTCCACAATTAAAAGTAAAAACCACTCATGAAAAATATTGAATAGCACACACACACATACAAGACGGGAAAGAAACCCCCATGTCCACGAATTACAAAACTTAATGATTTAAAATGTCTATATTACCCAGAGTCATCCTCAGGTCCAATGCACACCTAAAATTCATAAGGATTAAATTATATTTCTTAAAAAATAAATACCTAGGACAGTCTTGGGTGAAATAAGTAAAGCAGGGGTCATCACAATACCTGATCCTGATTCTAATACTCACTGTGGAGCCATATCATCCCAAACAATGCAGATGCACACAGTCAGTCATGCTGCATCCCAGAAATAAATGTATGTATGGACATCAACGGAGTTTTCAATGGAGGCACCAACACTGCACACTGGACTGAGGACAGCTTCCTTAACGTATGATGATGGGGAAAATCAACACATGCAGAACACTGAGACACAGTCCTCCTCACCTAACACACAAAAGCAAACCTGAATCTTGGAAACGACTGAAGAAAAAAAGCACAATAGAAACAACTCAAAACCTTGTTAAAGGTAACAATTTTCTGGATAGGAAAACCAAACCTCAGGAGATAGAGAAAAAAATTGACAGCTACGATCACCTCAAATTACAAAGCTTTTGCACAGCAAAGGAAATGATCAGTACATGGGGAGAGAACTATGGGATGGGAGAAAACACATCATAGCCTTAAATGTGACTGGTTCTTATCCAGAAAACAGAAAGAACTAAAAGAAAAAAAATTAATTTAACTTTTAAAATGAGAAAATTATGACAGAGGCCCTTCTCCAAAGAATATGAATGGCCAACATACATAGGAAAAATTGCTCAGTTAGCCATCAGGGAGTACAAATCAAAGCCACCATGTGATGTCATTCACCCCAGTTAGTAGGGCTGCGATCAAAGTGACAAACAATAAATGCTAATGAGCATGTGGCCAACAGGGACTCTCACATGGTTGATGAGAATGTGAATTAGTACAGTTGTTATAAAGGTACCTAAAAATACTAAAAATAGTCCACTGTATGATCCAACTATCCCACTTCTAAGTATATAGCCAGAGGAAATTGAACTAGCATGCTTAGTTAAACATGCCTATGTGCCCTCATATTTTGCAGCAAAATTCGCAATAGTTAAGTCACAGATTCAGCCTGGCCACCCTCTAAAAAATGAATATGCTGTGTAGAACAATGGAGCATTACTTAGACATAGAGAATAATGGACTCCTGTAATTTGCCATGAAATAGCTAGTACTGGGTGGAAGTCATTATGTTAGGTAAAATAAGCCAAACCGCTCCAGGGGAACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGCATATGTATCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGACCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGAGTGGGTGGGTAGGGGGGTGAGGGGGTATGGGGGAGTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAAAAAACCTAATTTAAAAAAATGTTTGGGAAAAAAAATAAGCCAAACAACAGAAGAGCAAATCCCTATGTGTATGTGTCCCTTTTTCCCTCTCAAACAAAGAACAGCAATAAGACACTGACCTGAAAGTAGCATACTAAGATATGGAGACTGGAAAGATAGGGGTTAAAGAAAAGAGCAACGGGATTCAGTCATCTCACCTTTTATGCTTGTATGAAGTCAGAACATTAACCACAAACAGTTAATTACATGTTAAAAGATTAGGGTTGGGGAGATGGCTCGATTGATAACATTGAAGAACCTGATTTTGATCTCTGGAACCCATATAAAAAAATAAAAGTAAAAACATTAGACATGGTACAACATGCAATAATAATCCCAGTACTTTGTGGGGGTAGGGGGGAGACTGAGGAATGCCTGGGGCTTCCTGTACTCAACAGAGAGACAGCCTAGCCTTCTAGATGAGATCAGGACTCTAAAGAGCTATAGTACCTGAGGAATGATACTCACAGTTGTCCTCTGGCTTCTAAACGATGGCACAGATGCACATGCATGTGCAGCTATGAAAGCACACACACACACACACACACACACACACACACACACATACACACACACACGTTCAAAATTGTAAGATTAGAATGTCATGGAGAAAGGATATTTAAAACTCCCCTGAATGAATAAATGAATGAGTGAATGAATGGTAGAGAGAGTCAGGGAAGAGTGATGCGCAAGGTGAGCCATGTGGGAAGACAGGCTGGCAGGAGTGTAGGAGGGAGAACAGGCAAGCAGCAGGAAGATACTGTGGCCAACCATGATAAGGAAACTCTTTGGGGATGAGAGTCCATGCTTCAGGAGGCAGTTCCTCCCTCTGCAGACTTTGACCTCCACTCCCATCCAAGGACAATCAAGGTGGGGAGATACGTGAGGGGATGGTAAGTTTTCCTTCTGGACTTAAGGAATAGTCACAATAAGGAGTAAGAGAACTTGAACCTGGGTGAAGTCACTAAACTGTTAGTGATAGTGTAGAACTTTACTGCTCCCCCACAACAATGCAGTCATGAATATTGCTGTGCCCAATATAAGCACTGCAACTCTTGAGTCCTAACATTGCCAACATAGTCCACTAGGAAGCATTGATGTGAGTCCCTAAATGAATCACTGCTTGGGCTTTTGAAGCCCTGTGACCCTGGAGGTTATGGACTCTTGCTTTTTGGCAGAGCTCTGTGCCTGAGGGGAAAGAACTGCAGGTTCTGAGTCTAATCGGAGCTCCCTAATCCTGCTGGATGCTTCCGAGCGGCAGCCCACAGTCTAGCCATGGAACCAGAGCTAAGATACAAGAGCCAGCACCATCTCTTTGCCAAGCTATTGCTTCTGAGCCCTGATACTTTGATCAAAGCCAAGACTATTGTATATATATTCTTTACTTTCAAAAACAATAACAATAAACAAACAAACAAACTCCAGAAAAACAATTTTCTCTCACATGTCCCCCAGCTCCTCAATGGGTCTCATCCAGAGGGATGATAGAAGTTGAAAATCACCATTGGCCACTGATCCCCAAAACGCAGACCACCCTGTGGGTCACATTTGGGAGCCAGCCAGCTGAGACACCCCACCTGCCCCTCAAAGCTCCTGCAATCCCAAGTCTGCAGAGACCTCAGAATCAGGGCAGGACATGAGGGCTCTAACAGCAGGGGCAATAACCCCCTAAGCTCAGCATTTAGAAGGACATCACAGACTTCAGGATGACCTGGGCTCTGTGCCTAGTGTCTCCTCCAGCACCCCAAGGCGTTACCTGCCTTAAAAAAGAGGTGACATTCAAAGCAGATCGAGAAGATTTCTTGTTATTGCTTTAATGGTTCCCAGGCAACGTTTCCTCTTGCTTTCAGACCAGCAGAAGTGATCAGAAAATGATTAGAGTTTCTCTTGCAGATGAAATTTAGATTTTTGCATTTGTGCTGCTTTATGAGCTGAAACTATTTTAAGAGCCAATTTATAGTTTTCTCTACTAAAATCGGATTAAAAAAAAATAAGCAAGGAGGTTCAGCAATTAGAGGATACCATTAGTGGCTTGCCCTAAGGCAATACTCTGTGTTTACTACTTTTTTTTAAGTTTGCCTTAATTTGATCTATCTTAGCATCGCCCCATTTTATCAAGCAAGAGATGGAGGGAACTACCTTCACAGGGCTAGCTGAGGTCTCCTATGTGTTCACAGAGAGGATGCCTTTACAGTTAGATGGCTTCTAGAAGATCTTATTTCTCTCAGATGTATTTATTCCTTCAGGAAGAAGTTCCCTTTTGAGCATTTCCAACATCTAAACCTTTGAGAACATAGACATTCCCTCTCTTCTCCATTCCCAAAGCAACCATTCTCAGTCTGTGGGCTGAGACCATGGGAAAAACACGTATTTCTGGTGATCTTAGGAATTCCCAACCATAAATTTATTTATGTTGTTACTTTCATATCTGTAATTTTGATACTGAGAAGTCTCTCAGTTCCTGAGGCCAGTAGGAGTTTATGTTTTCCAGTGGTCATGATCCACAGGTTGAGAACTGCGATCTTGGAGTGTCTCATTAGGGAAGCCATTGTGGAATCTTACTAGAGCTTTCTGCCCTGCCCAGTCCTGACCTAGGAACTCTGAACATGGGCTATACAAAACTATCTCCCTCTACCTCTACTAACCCACTACTTCCAGGCCAGGAAGAGACTGTCCTTCTTGAAGAGAAGAGAACCTGTACTCTTTGTATCCATCTCAAGTTGGATACAGAGAATATCCAACTGAGAGTCAAGTATTATGCTGACTGAATCAACAGCGATTACACTTGCCTTCTGAAAAGAAAGTTGTGTCGTTCCTACAG
Seq C2 exon
GAACCTACTGGCATCGACTTACCTCTCCTGGACCCTGCTAGTACCATCACCACTGTCACCGGACCAAGTGCTTTCAGCATTCCTCTCCCTATCCGGCAGAAGCTATGCAGCAGCCTGGATGCCCCTCAAACAAGAGGCCATGACTGGAGGATGCTGGCCCATAAACTCAACCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921-Unc5c:NM_009472:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(33.8=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: