GgaINT0077571 @ galGal3
Intron Retention
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60175459-60178067:-
Coord C1 exon
chr4:60177903-60178067
Coord A exon
chr4:60175638-60177902
Coord C2 exon
chr4:60175459-60175637
Length
2265 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGCCTTCTTTCCAACATCAGGAA
3' ss Score
7.95
Exon sequences
Seq C1 exon
GAGATTCCTTTTTACCACATCTGGAGCGGGTGCCAGAGGAACTTGCACTGCACCTTCACGCTGGAACGATTCAGTCTCAATACCCTGGAGCTCGTCTGCAAACTCTGTGTGCGGCAAGTCGAAGGAGAAGGGCAGATCTTCCAGCTGAACTGCTCAGTATCAGAG
Seq A exon
GTAAGAGGCATTGCTGTGGGAGCATGGGAGGACTAAGGAGTTACAGCCTTTCCTATCACTGACTCTTTTGTGCTTCTTATTTTACTCCTGATTGTTGAGATCATCAGAAGAGAGAGATTAAGTTGTTGCTTTATATCTCTTCTTGCATTTTCCCTTAGTTTTTCCTCTCTACCATGTCATCTGGAATGGAGCACGCTGCTTCAAGGAGGGAGGAGGGCAGTAATGGTGTCCTTGATTATTTGTTTTTCTCCATGGCGGAGCTCTTTCCCTAACATTGCCTAACACATCTCATGAAGCACCGCATGGTTCTGGCTCCTGGATAGGGAATAGCAGATGGTCTAGTTGCAACAGACTTGTCCCCCCGACTTTGCTACTGCTGCAAATCACAGTTATTATTTTTGACAGTTTTTCTTTTGCTGACTGACATTTTCCAGTAGAAAAAGGATCGTAAGTTTTGGGGCATCTTTGCCATAGCTGAAAGATTTTAGCTGAGGGTAAGTGGCACACTCAGGTATGAAGCAGTGTTGACATCAGTGTTTGTGTTGGTGGCTTTTGTGCCTGCTAGATCTCAGGTGTTGTCTTCATTTTGTGATTCATTGTCATCCCTTAGTTGCTGCGAGGTCAGAACAGAGAAACGGAGTAGAACTACATTATAAGCCCCATATGTCAGAAAAGCAGAGTAAATGAGCTTTTACCCTGCTCAAGGGCTGCTCCTTTATCTTTACAAAGATCTACTATTGGACAAAATGCATTTAGGAATTTAATCTACATCCGACAGCAAACCTAGAACACATCCTCATCTTTTATTGCATTTATTTATTATTTACTTTCCTAATTTACTTTCAATTTCATCTCCAAATCTCTTTGAAAATGGGTTGCCAGGTGAGAGAGCAGAGGAGGCATTTTTATGGCACTGTTCTGTGGCACCCAGACATCAGTGGCTGCTGGTTTGGGGAAAGGCTGGGAGGTGACAGATAAAAGTTGCTGGTACTGTAGGGCCGTGATGGTGTGCATCATTACCCATAACATTTGCTTGGTTATTGGGTGTAGAGCTCCATTTTCAGCTGGGGAGTATACAGCATTAAAGACAGATGGTGAAACAAGTATCATAAACAATTACTGTAATAAGTGCTGCATTGAGGTAATCTCTAATTTAACCTAACAGAGAAGAGAAAGAACTGAGAGTAACTTTAATGAAATGCAAATACAGACTATAATCATCTTCAGCTGCTTCTATGTAATAGGGCCTGGTAATAGATTCAGGGGGAACGGGATAATATTCATGTCTTGTGCGGTGATCCCATCCATCAGGGATGAATAGAAAGAGTGAATAATACTGCGGTTATCAAGGCTGCCCGTTGCAAAATTGCTCCTTGTTGTTGACACTGAGTGACGTGCCCAACCCAAATGAAGGACAGAAAGAGTTTGGGATGCTAAGGGCTGGAATAGAATGTTGGATTCTTCAGCACCAGTGAGCCTGGATGTGGCAGCAGTAGCATATGAATCCTTCTGCAGCCCATACTGCTGGATGAGAAGAAGGACAAAGACAACAGCTTGTGCCCTGGAGCAGTGGGCTTGGTGCAACCAGTTTGCAATGCAGGACATTGCCTGATTTTAATATGGTTTTATGAGGCCTTCTCAGCAGTCAGTTTGATATGAAACAACCAGACAGCTCAAGGAGGAGCAAATAAATTGACATTTAAGGATGAGTATTTTGCTTCCCTCCAGCAGAGGCAGGGATGAAGTTGTTCTTCTCACTTCTGTCAGCATCACCTCAGGCTGGTCACACTGCAAATGAGAGCAATTGGAAATTCAAACAGGACATGTGGAATGAGAGCAAGTCACTCCTGCTTTTTTCCAGGCTTCTGCCCCAAATAATTAACCAACTCTCACTGACCTCTGAGAGATTATTTTTTCACCCAAGCTAGGAGAGCTCAGTACTGCCCTGGAAGTAGTAATTGGCTCTGAAATGTGACAAAGTGCTTGATATTTATTTAAAGAAAGCGATTAGTTAAGCTGGGCACAATGTAGTCCAGCCATAGTAATCTTCATCCGCAAAGATAAGGCAACCAAAAGTCTGGTATCTACCTAGAGCTGGCTCTTTTCCAGCTAATATAAATGCTTGATTGACAGAAGGCTGCTGCTCTTTTAATGCATGCAAGTAAAAGCACTGACTTTTAGAGGATACACTTCTGTGAATGCTTTTGCACCCAGCAACAAAACTAATGTATTTTATTTTGTCTTTTGCCTTCTTTCCAACATCAG
Seq C2 exon
GAACCCACTGGCATTGATTATCCCATCATGGATTCAGCAGGCAGCATCACAACGATAGTTGGGCCCAACGCTTTCAGCATCCCCCTCCCAATAAGGCAGAAGCTCTGCAGCAGCCTGGATGCACCCCAGACCCGGGGCCATGACTGGAGGATGCTGGCCCACAAGCTGAAATTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219:ENSGALT00000019955:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(33.8=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]