RnoINT0160618 @ rn6
Intron Retention
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247380873-247390179:+
Coord C1 exon
chr2:247380873-247381037
Coord A exon
chr2:247381038-247390000
Coord C2 exon
chr2:247390001-247390179
Length
8963 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AAGTGATGTCCCTCCTACAGGAA
3' ss Score
8.07
Exon sequences
Seq C1 exon
GAAATTCCATTTTACCACATCTGGAGTGGCTCTCAAAGAAACCTCCACTGTACCTTCACTCTGGAAAGACTCAGCCTAAACACAGTAGAGCTGGTTTGCAAACTCTGTGTGCGGCAGGTTGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGTACTGTGTCAGAG
Seq A exon
GTAAGACACTCTTATGATCCTGGAGAGGATCTTGGGAAAGAATGGTTAGGGGTGGGCAAATCTTTTTCTGTGTAAGTAACACAGAAGACTTCCTGAGCTGTTCTTATGTTCTTAATGCAATGGGGAGAGGAATTGTTTTGCAAAACTAAGTTTTCATATGCCATCCATTTAAGATTCATACTGTAACGTATAAAAAGACATCTGAGAAAAAGACATGACAGTAAATCCTGGTAATCCCCAACACTACTGAAAATTGCTTCAAATAAATCCAAGGCTAGCTTAGCTGAAGTTGTGAGTTGTGGGCCAGCTGTGGCCACATAGTGAGACCACATTTTCACACACTGTGAGAGAAACACAATTAAGATCTGAACTCCAAGTGCAAGATTTTAGTAGCATGCACACAGCACTTGCCACCAGCATCCTTCATCTGCTTGCTTCTCTCTCACAGGGACTTCTGTCATTTTGTCACAGTCATGTGCTACTGAGTAGAATGAAGAAAAGGAAGGGTGCCTGTTACCCCACTTTGTTCCCATATTGAAAGGAGAAACTTTTAGGCTTCCTTTCTTTCTCTAACCTCCAAATATCAGAGAAGGTGTCCTTCACCCCAGAGTGGGACATACTCCAGGAATAGAAGAAAAGTCCATACTCTCCATAGTGGTCAGTTTTTCTTTGTCTGCTATGATTTTCTCACACACGCAGCTGGTCATTTTTAAACATTCATATTCCAGCAGTAACAATAGTTGCTGTTATTTCAAACCTCGCTGTAAGGAAATAGGAGGTACCCATGACCTTCTCTGTCCTCTTTGGATGCAAAGACTATGGTTTGAAAAGCGGTAAGCCTTCATGTTGGAAGAACAAAGGAGGATGAATAAGCCATTTGCTCCGAAGGCTGCCCCTTGAGGCCCCTTGGAACCCAGCTCCATGCTGCTGTGCGAGCTACAAAGCCTATGAACACTACTACAGCCAGCAGAGTATGATTTAAAACACTTTTTTTTTGTCTTCTGCTTGGAGATGACTGCAATGTCAGTCTGTCTGGCCTGTCTTGTGCCACATGTCCTATTTAAAGATGGTCTCCCTTAGCAAAGGAGGCAGAGGTGGGTGGGGTGGGGAGAGCGTGTGAGCTTATTGAAGCTCCAATCTTCTTTCCCACAGCCTGTGAGGCGAGGTCATCCTCTCCTCCTGTAGTTTCATGAGACTTCTGACTCATAAACAACTTTAGTCACAGACCTCGGTGACATTCATAAGGAATGATCTCTGTGTCAGGGTGCCATGGCAACCGCCAGGCCTTTGGATGCACAGCCCTATCTCCCAGGCACACAGCACCACCCCTGCTGGCTTCGGAGGGTGCTTTCACTTTCCTGGCCCAGCAGGTCTGCAAAGTTCAATAACCACCCAGCTCCTGGGACAACAAAGGCTGTGGAATTTTGGAGGGGGGCAAGGAGTCTGGCCCTTTGATGCATGCTTTCTGTTCAGCATGAACATTTGCTGCTCCCTGAAAAGGTGGATCAGATGCAGCCACAAAGAAAGGAGAGCCGAGAGCCGGCTCTGAGCTCTCCCCCACCACAACTTAAGGACTCCTTTCTGGTGCCAACACAGAAAAAAGATTATTGCTTTTGCAACTTGGCAGTCAGCTCAGAGGCCAACCCTGTAGTCACGCAGCAGGCATTTGCCCGCGTGTGACAGACGAGCGCATGAAACTCGGAATGGAAGAAGTGACCAGACTGGGAAAAAAACGTTGGGGATTCAGGAACATGCTATCGCTTGTACTTCTGTGTCCCTGCATTCCATTACTGTGGTTATCATTTGAATGCAGGTTGGGTTTGGGAACAGGGAGGAAGGTTTCTAGCACTGATGGTGGTGCTGGAGCAGTACGAGGCTCTCGGCAGAAGAGCCAATGGGCTCTGAGGAGTCCAGTGACCCAAGTCTTCATCAAACACTGAGAAGTAGCGCGGTATGATTCAGAAGTTGGTATAAATAGAGAAAAGGCTTCATTTGTGGTAACTTTCTTCTGAGCCCTGCTCTTTTGATCACAAGGCAAGATGACAGCATCTAAGGGGGTCTAATTCCAATATCCTATCCCCAGAGAATTATGTCTTATTTAGAATACGTTGTCTTTTCCTTTTCCCACTAGTGACCTACTAATGAAGGCCACTCACCAGAGGTCATTAATAAAATCATACAACTCAGGGCCTCTAGAGCCCAGGGTGGAAACTTTACCCACCACAGGGACCAGTCTGGACAGGACATGCATACAGCATGGCTTTCTCAAGAGTCATCACCTGTTCTTCTATATCCCCTTTCCCAGATGTCTTAAAAAAGCCTCTCACTGAAGAGAACATGTTTCAGAAGGAAAATACCTTGAAGACTAAAATCTTGGTGTCGAGATGAAAATGATGAAGGATATTACATTTTTTGTTTCTTTAGACAGGGGCCAGGTAAAACAGTTGTCCAAAGTGAAAATATGGTACAGAGAAGGAAGGAAAACTTGAAGTGTTTTAGGCTTTGGTGTCGTCTTAGCAGTCGACAACGACCAATCATAATAAATCCTCTCACTATTAGGTAGGGCTACTGAGAATATTCAGGACCTGAACGTTTAGGAAGTGTCATAAGCGGAACTCGCCCCCTGGCATGTGATCACATCCACTATTCTTCACTGGAATAACTGGCTTCAGCAAGCTTCTGCCTCTCTGATCAGGGGAATCCATTGCCAGCTTAAGCATCAGGTGTCCTGTTCTCAAAACACCAGATAAAGCTCAGACTGTATAGATGGCTTGGAGCCCTTGCTGCTCTTGCACAAGACCTGGGTATAGCTCCAGTGCCCAAATTGCAGATCACAACTATCTGACTTCAAGGTCAGTCTGGTCTAGACACTGAGTTCTTGGATAGCCAAGGCTACACAGGCTACCTGTCTCAATAATCCAGAAATTAAAAGAGAGAGAGGGGGGAGGGAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGGATGGAGGGAGGGAGGAAGGGAAGGAAAGAAGGAAAGAAGGAAGGAAGAATCAATCTTAAGATGTAAAGGAGGATTTATGGCTTCTATAAACTATATAAAGAAAACTACCACTCAACTAAAGTTGTGGGTTGATCACCCAGAACAGATGTTTGGTTAATGCTGAAAAATCATATGGTTAACTAAGAAAATTATAACATCAAAAGCAGATGGTTCCGCTATCATAAAAGATTATTGTAATAAACACTCTGTGAGACTAATCTCTACTTTTACCTGGAAGTAAAAGAAAAGCCAATAGCAAATGAAAATTACTACATGAAATTTAAACATAAATGTACATGTGAATTTCCTCTGATTACTTGCAATGTATTGTATTATAGAGTATGCTATCAGCCATCCAGTAAGTGTAGTACAAAGCTTGTTTCATAGACACAGGCAGAGTAAACAAGTTAGGAGTTAGGGCAATGCCCACATAAAATGGTGCTGGCTCCCTGCTGAACAAGAAGGAGATGAGCTGACTATGTGAGGCTTTCCTGAGATCCATATCTATTTTAAACTAGCCCTTCTTTACCCTAGGGGTTTACCAATGAGAAGAATCAAGACCTCATTTGCAATTAGTTAGAAGGAAACAGAACACTCAACTCTGCAGGTGGAATTTAGCAGGAATGGGTTTCACTGTCTTCCTACCATAGCAAAACATACCTGTTCCCATTTAGGCAAACAGTAATTGAGTAACTTCAGTGTATAGGGTACCATGTGAGTAAGTAGTACAGGGGAATCTGTTGATAAAAACAACAAATAAAATTCTCTGACAAGAAATGAAGAAGGTAAAGGAATTTGCAGTTCATCCAGTATGCATAGGGCTGAACCTGAGGAATACGGGAAGAGTTATGGCCATGTCCTGGCTGGCCTCCAGGTAGGGTGTCTTGGTATATATGAAGAAGGGTGTTGTAGCACAAGTTCTTTTTGTCAAATTTTAAGGCATGTGTGTAACATGTTAAAGGAAAGGCCTGTCAAAGGGATGCTTCTAGTAGTGGTGGTAGGAATAAGAAGCAGGAGAACGAACGTCCCAGCACTCAATCAGGGCAAGTAACACCAAGATGGTGACCTGAGAAGGGTTGGGGCCAGACTGAGAAGTGAGGGAAGCAGAATTGTAGGGGTTCCCTACTCTAAGTCAGAACTGGAGCTCAGTTTCCACCATGGCCTATAGAGACCCACATAGCCGTAGGTGGGGGCTATGCATATCCTTCACTGATTAATCAAAAGTAGGGGCTAAACTTTTAAAGAAGAACTACGTCCAATTCTTTTCACACTATTCCACAGTTTTCATGAGAGGGCAGTTTTGAAGCTATGATACCAACATTGCCTTTTAAGAAAATTAGACATGCGACAGCTAAAGACCAATACCTATGACAAAATAAACACAAAATTCTGATGAAGAGGCTTCATCCCAGAGATGAAAGGATGGTTTAATTATTTAATGCATGCAAACCAAACATCATGTATCATATGTACAGAATGAAAGATTTAAAAAATATGAGCATCCCGGATATAGGAAAGCCATAACACAATTCAACAACTCTAGATGTTAAAAGCTTCAAACAGATTGTATGTTGAAGAAGCATACATGAACATAAAATATAATATATGGTAAGCCCACAACTTTATCATACTGAGTAGGGGAAAGGTGAAGGCTTTTTCTTTTAAGTCAGGGACACATATGTAAGTATCCGCTTTCATATCTCTTACTAAGAATAATACAAATAAACAGAGCAATCTAACAAGAGAAATAAAGAGAAGACTAACAAATTGGAAAGGAAAAATTAAAGTCTCTCTTTATGCTCATGGTATGTTTCTATCCACAGAAAAATAGACTCCAAAGAGTATAATTGATAATTCAGTCAGATACAAAATCAACTCATAGAATTCACTAGTTTATTTACACATCAAAGATGAATTGTGGAGAGAAATCATGACTACAATGCTGTTTATAGTAGGCAGAGAAAAAAATATACCTTTGGATAAACTTAATGGAAGGAGAAAAAATTTGCAGTGAAAAAGCACAAACCACTCATGAAAAATATTGGATAGTACACACACACATACAAGATGGAAAAAACTCCCATGTCCGTGAATTATAAAAATCAATGCCTTAAAATTTCTATATTACTCAGAGTCAACTTTGGGTTCAAGACAAACCTAAAATGCATAAGGCTTAAAGTATATTTCTTAAAAAAAATAAATACCTAAAGCAATCCTGGGTGAAATCAGCAAAGTAGGGGTCATCACAATACCTGATCCTAGCACTTACTGTGGAGCCATGGATGTCAGTCATGCAGCATCCCAGGAGTAAGTGTATGCACGTACATCTAGATGTTTTCAATGGAGTTACCAATGCTGCACACTGGACTGAGAATGGTCCCTAAACAAGTGATGTTGGGGAAAATCAATACATGTAGAAGACTGAGACATAATCCTCCTCACCCTACACACAAAGCCTAACCTGAAACTTGGAAACTACTGGGGGAAAAAAAACACAATGGAAACAACTCAAAACCTTGTTAAAGGTGATGATTTTTCTGGATTGGAAAACCAAACCTCGGGAAATAGAGGAAACACTTGAAAGCTAGGATCACTCAAATTACAAAGATTTTGTACAGCAAAGGAAATGATCCGCACACGGACAGAGAGCTACAGGATGGGAGAAAACACATGCCAGTTTCAAGGGTGACTGGTTCTTAGCCAGAAAATAGAAAGAACTAAAAAAATTAACTTTTAAAATGAACAAATTATGACAAAGGCCCTTCTCAAAAGAACACGGATGGCCAACATACATGGGGAAAAGTGCTCAGTTAGCCATCGGGGAATACAAATTAAAGCCACTCTGTGATGTCATTTACCCCAGTTAGTAGGGCTATGATCAAAGTGACAAACAATAAAGGCTAATGAGCATGTGGCCAAAAGGGACTCATATTGTTGATGGGAATATAATTAGTACAGTCATTTTAAAGGTGCCAGAAAATACTAAAAATAGTTCCCTGTATGATCCAGCTATCCCACTTCTAAGTATATAACCAGAGGAAATTGAACTAGCTAATCAAACAGGCCTATGTACTCTTGTTTATTGCAGCAAAACTCTCAATGGTTAAGTCATAGATTCAGCCTAGCCACCCTCAACAAAATAAACATGCTGTGTATAACAGTGGAGCATTACTCAGCCATAAAGAATAATGGAATCCTGTAATTTGCCATAGCATAGCACATAGCTAGAACTGGATGGAGGCTATTACATTAGGTAAAATAAGCCAAACTGCACAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGACAAAGAACAACAATAAGACACTGACCTGGAAGTGAAATACTAAGAACTGGAGATTGAAAAAGATGGGGGTTATAGAAAAGAGCAACGAGATTCAGTCACTTGACCCTTTTTGCTTCCATGAAGTCAGAACATTAACCACATACAGTTAAATACCTGAGACATGGTGCAACATGCATTAATATTTCCAGCTCTGAGGAAAGGAGGAGACAGCCTAGCCTTCTAGATGAGATGTAGACTCAAAAACGAAAGAGCTACAGTACCTCAGGAATGATACTCACAGTTGTCCCATGGCTTCTAAGCAATAGCACAGATACACACACTCACACACACACACACACACACACACACACACACACGTACAAAATTTTAAGGTTGAAATGTCATGGAGAAAAGACATTAAACACTTTCTTGAGTGAATGAATGAACGAATGAATGAATGATGGATGGTTGGATGAATGAATGAATGAATGAATGATTGATTGATTAGGAAAAAAGGTCAGGGAAACATGGTGCACATGGTGAACCACGTGGGAAGACAGGCTTGCAGGAGTGCAGGGCAGAGGACAGGCAAGCAGCAGGAAGATACCATGGCCAACCATGATAGAACTCTTTGGGGAGAAGAATCCATGCTTCACAAGCCATCATGTGCAGACTTTAACCTCCACTCCCATCCAAGGACAATCAAGGTGGAGGATGTACTTAAGGGGATGGTAGGTTTTCCTTCTGGGCCTAAGGAGTAGTCACAATTGTCATTTCCCGTAAAGGAGTATGAGGACTTGAACCAGGGCAAAGTCACTAAACTATAGAGATAGCGTGAACTTCTCTGCTTCCCCACAACAGTGCAGTCATGTGCCCAACAGAATCATTGCACCTCTTGAGTCCTAACATTTCCAACATGAATCCACCAATCAGCATTGATATGTGCCCCTCAATGACTCTGCTTGCCTTTTTGAAGCCCTGTGACCCTGGAGGTTATAAAATCATGCTTTTGGGTAGAGCTCTGTGCCTGAGGGGAAAGAGCTGCAGGTTTTCGGTCTCATCAGAGCTCTCTAATCCTGCGGATGCTTGCAAGCTGCCAGCCCACAGTCTAGCCATGGAGCCAGAGCTAATATACAGGAGCCAGCACCGTCTCTTTGCCAAGCTATGGGTTCTGTGCCCTGATACTTTGCTCAAAGCCAGGACTATTGTCTATATTCTATAATTTAAAAACAACAAACAAAAACAGAAAAACAATTTTCTCTAGCATGTCCTCCAATTCTTCCAATGAGTCTTATCCAGAATGATGATAGAAGTTGAAAATCAGCATTGGCCAACTGCTCCCCAAAAAGCAGACCACCCTGTGTGTCACACTTGGGTGTCAGCCAGCTGAGAGACTCCACCTGCTCCTCAAAGCTGCAGAGGCCTCAGATTCAGGGCAGGACATGAGGGCCCTAACAGTATTGGCACTGACCACTCCTCCACCCCCAAAGCTGAGAGCTTAGAAGAATATCAGACTTCAGGATGACCCCTGTCTGTGGCTAGTTTCTCCTCCAGCAACTACTTGTGCACACCAAGGAGTTACCTGCCTTACAAAGGAGGTGACATTGAAAGCAGATCAAGAAGATTTCTTCTTATTGCTTTAATGGTTCCCAAGCAACATTTCCTCTTGCTTTCAGACCAGCAGAAGTGATCAGAAAGTGATTAGAGTTTCTCTTGCAGATGAAATTTAGATTTTGCATTTGTGCTGCTTTATGAGCTGAAACTATTTTAAGAGCCAATTTATAGTTTTCTCTACTAAAATTGGATTTAAAAAAAATAAGCAAGGAGGTTCAGCAATTAGAGGATACTGTTAGTGGCTTGCCCTAAGGCAATATTCTGTGTTTACTATTTTCTTTTTTTTTTTTTTTAAGAATTTGTCTTAATTTGATATCTCTTAGCCTAGTCCCATTTTATGAAGCAAGAGAGGAAGGGAGCCACCTTCACAGGGCTAGATGGAGTTTCCTGTGCGTTCACAGAGGGGAGGCCTTTAGGGTTAGTGGCTTCTAGAAGAACTTATTTATCTCAGATCTACTTATTCCTTCAGAAAGAACTTCCTTTTGAGCATTTCCAACATCTAAACCGTCATCGGAAAACACGTTTCTGATGGTCTTCGGAATTCCCAATCATAAATTTATTTATGTTGCCACTTCATATCTGTAATTTTGATACTGAGAAGTATCTCAGTCCCTAAGGCCACTAGAAGTATATGTGTTCTGGTGATCATGACCCACAGGTTGAGAACTGCTGTCTTGGAGTGTCTCATTAGGGAAGCCATTGTGGAATTTCACCAGAGCTTTCTGCCCTGCCCAGTCCTGACCTATGACCCCTGAACACAGGGCTATACAAAACTACCTCCCAATGTCCTGCTTATACTAACCTACTACTTCCAGGCCAGGAAGAAACTGTCCTTCCTGAAGAGAACAGAACTTACTCTCTGTATCCATCTCAAGTTGGATACAGAGAATATCCAACTGAGAGCAAAGCATTATACTGATTGGGTCAACAGGGATTACATTTGTCTTCTACAAATAAAGTGATGTCCCTCCTACAG
Seq C2 exon
GAACCTACTGGTATCGATTTGCCTCTCCTGGACCCTGCTAGCACCATTACCACTGTCACTGGACCAAGTGCTTTCAGCATCCCTCTTCCTATCCGGCAGAAGCTATGTAGCAGCCTGGATGCCCCCCAAACAAGAGGCCATGACTGGAGGATGCTGGCCCACAAACTTAACCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071:ENSRNOT00000050330:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(33.8=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]