BtaINT0157573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30776619-30784656:+
Coord C1 exon
chr6:30776619-30776783
Coord A exon
chr6:30776784-30784477
Coord C2 exon
chr6:30784478-30784656
Length
7694 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTGCCCTGCCTGAACCACAGGAA
3' ss Score
6.62
Exon sequences
Seq C1 exon
GAAATTCCATTCTACCATGTCTGGAGTGGGTCTCAGAGAAACCTCCACTGCACGTTCACTCTGGAAAGATTCAGCCTGAACACAGTGGAGCTGGTCTGCAAACTGTGTGTGCGGCAAGTGGAGGGAGAAGGGCAGATCTTCCAGCTGAACTGCACCGTGTCTGAG
Seq A exon
GTAAGAGGCGCCCGCGGTGCTCACAAGCGAGAGGCACAAAGCATCTCAGTGCGACCTGGGGGAGTCCTGGGGGGCCGGCTCGTTCACAAGACAGTGCTTTTAATGAACACAGGGAGGTACCGATACACAAAAGTGCAGTAGAGGCTCCTTTTCAAAAAACAAGACTTTTCTAGTTCGTGACATGCATTTAAGGACTTCTTACACACATCTGAACTTCAGCCATAAGGATTAACTCGTGTGCACAAACAGTAACTTTCCCAAAGCACCCCCACTGTCCCTGTTCCCCTGGATCCACTGACGCTCTTCCTGTCGGTTCTGCTGCTTTCTTCCGGATGCACCTGCCTTTGCCCAGCTGTGCGCCGCCCACCGCCTCCTTTCCTTTCTTCTCCATGTTGAAAGGAGAAAGCTCTGGGTGTGCTTGCTGTCTTATACCTCACCCTCCAAACAGAAGAAGAGATGCCCCTCTCCCCAGTGTGACAGAGTCCAGAAACACAAGGTAAACCTAGGCATCTCCTCCAGCGGCCCTCTCTCCATCTTTCCTCGCTGCGATCCTCACGCGCTTCAGGTGGGACTTTTTAGAATGTCTGTATCTCAGAAATAACAATCATTGCTGCTATTTAAAACTTCCCTGGGTGGAAAGAAGGGGTGCTCATGACCTTCCTGGTTACCTGGGACCTCAGGGTTTGGAGTTAGGACAGTGGAAACCCTTCAGGCCGAAGGCACGAGAGAGGACCAGACGAAAGGAAGGGGCAGCCCCTTCTGGGGCCTGCAGAACGGGGCTTGGTGCTGCTTCGTGAGCCACAGCACGGAACTGCTATCTTTTAGAACTACGGTATCTGATTTAAAAGACCCCTCTCCCTTGCCGGCTCATGTGCGGTGACGAACAACATGTCACCTCGTGTTCGGGGTGTCTCTCTCTCTGTGTCATATTCAAGGACGGTCTTCCTTAGCAAACCGAGGGGGGAAGCGCATTGGCCCCGCCGCATCCTCCTTTCCCACAGCCCTCTGAGCTGCGGTCATCATTTCCTCCCGCAGTTTCATGAGACTTTTGACTCATAAACAACTTCAGTCACAGACCTTGGTGACATTCATAAGGCATGATCTCGGTGTCAGGGCGCCATGGCAACCGCCCAGCCTTCTGACAGGCCGGCCTATCGCCTGGGCCCAGAGCACCACTCCTGCTGGCTCGGGAGGGTGTTTTCACTTTCCAGGCCCAGCAGGTCTGCAAAGTTCAATAACCACCCAGCTCCAGGGACAACAAAGGCTGCGGAATTTTGGAGCGGGGTGAGGAGGTCTGCGCCTTTGATGCTTGCTTTCTGTTCAGCCTGAGCATCGGCTGTGTGATGAAAAGGTGGATCAGCCGCAAATGAAAGGGCGCCGTGCAGGGCTCTACTCCCGCTGAGGAGACAGTGTCGCCTAGTGTGATCACAGTTTAAGGACTTTCTTTCTTGTGCCAACAGAGAGGAAAGATGGTTTCTTTTGCAACCCGGTGGTTGTCAGCTCCGAGAGGCCCACCCTTCAAGTCCCCTCAGAGGCCTGTGACAGACAAGCACAGTGAACAGGGGTGGGGGAGTGTGTGTGCAGAAAGGCCCCAAGTCAGGTGACTTTGGGGATTAGGGGGCGCACGGCTGCTTTTCCTTCTGGGTCACTGAGTCCCACCGCTGCTGTTAGCATCTGAATGCTGTGCAAGCGGGCTGGTACTGACGTTGGGAGCCAGCCTGTACACTGGGAAACAATTGGCTCTGGAGTGCCCTAAGCCCTGGATCCTCATCAAAAGCTCGAGGTGGGGTCCCCTGTGACTGACAAGCCATAACCAACCAGAGAAAGGGCTCCATGGGTGGTGTCTGTCTGCTGGATGGGGCTCCCCCCTAGGGTCACATGACAAGTTGGCGGGTGGGCTGGGGTTGCAGTTCCAGTGTCCCATCTCCCAAGAAGGAGCTGACTTTCTAGGACTGTGCCGCTCCCCCCGTGCTCCTTTCTAAAGCCACTCAGCCCTCGGGCCTCTCCAGCCAGGTGGAGGACCTGCTGACCCCCAGGGAGACCCAGCTGTCCTGGACATAGACCAAGGTGATGACAGGAGCTGGATGGTTGTTCCTCTCTGGGTGCCTCAGCCAGAGATTCCTTCCTTACCTAGAGATAAAGTTTAAGAATGAAAATGCCTGGCAGGGTATGGGGATGAATGAGTGTCAAAATGTAAATGATGGTAAGAGGGTTCTTAGAGGAACCAGGGAAGTAAGAAAGGGGAAGGTGCCCACCAAGAGAGAAAAAAGTAAAAGAGGAATTTCAGTCTTTTCAGGACTTTTAACTATAAAAACAAAGACATTATAACTGTTGACCCACAGCACTTCTGTGTACACCGAGAACAGTGTCAGCATCCAAAGCTTCACTCTGCTACAGCCATCCTATTTACCTCTTCTGTTTTATATAATCTGTTCAAAAGGACGCTTGGGGAAATCTAGTTTTTCTAAGTGACTTCCCGAAGAGTCAGAATACAGGAGTGGAAAGTTACTTCTCCTGTGGACTGTTGAAATGTAGGCCATAGCAGCTGTTTGGTTAATGGTGAAAAATCATATGTTTAAGAGAATCGTAACGTCAAAGGCAGATGGTACCAATATCATAAACAATTATTGTAATAAGCGTTATGTGAGAGTAAACTCTACTTTCACCTGGAAGTAAAGGAAGAAATAATAGCAACAGAAATTAGTAGGTGAAATTTAAATGTAAATGTATGTATTTTCTTTTATCTCCAAGGCTGTTGTCAGCCATCTGATAAGAGAGACAAGATGATGCCCTTTGGGGCTTCTTATTTTGTCCACGCAGAAATACATAGGATGGCGATGCAGGGTTTGAAGGCCCACGTAAAGTGCTGACGGTTCCTTATTCACCAGGAGAAGGGGAACCGGGCGGATGTGCACACACCTTCCTGAGAGCCGTGCCTCCCTCTCCTTGCCCTTCACCTTCAGTACTGAACAGTGAGAAGGGCCTTGCCTTTAGCCACAGTTAGTTAGAAGCTCTGTGGAGTGGGTTTCATCCTCTGTCTGTATCAAGAAACATTTTCTCTCATTTCAACAAATATGAATTGAAGAGCTTCCGTATGCAAGGCACTGTCCTGAGCATCATAGGAGTTCTGGGGATGACAAAAACATTCTCATCTCCAAGCAGTTGGGGAAGTCAGAGGAAGTCCTCTGTAAGTACAGCCAAGATTCACAGGGCAGACTGGGTGGAGATCCCAAGCTGTGGGATGCACTATAGGAGGGCTCCCAACAGATAGCTTGGGGTGTTTGCTCAGGAAACATGCTTTCTGGTCTAGGCTTTGAAGGGGTTGGCCTGACAGAGGTTCAGGGAAAGAGCAGAAGAGCTAGCAAAAGTGAGGTCACAGTGTTCGTTGTTGCAGTTGTGTCCGACTCTTTGCGACCCCATGGACTGTAACCTGCCAGACTCCTCTGTTCATGGAATTCTCCAGGCAAGAATACTGGAGTGAGGTACCCTGACCCTGGGAAAAATTGAAGGCAGGAGGAGAAGTGGGGGACAGAGATGTTTGGACAGCATCATGTCTCAATGGACATGAGTTTGAGCAAGCTCCAGGAGAGAGTGAGGACAGGGAAGCCTGGATTGCTGCAGTCCATGGGGTTGCAAAGAGTCGGACAAGACTGAGCGACTGAACAACAAACACCCTTAAGAAAGGCACTTGGACGAGTGAATGGACCAGTCTGAGGAGAGAGAGTCATGAGAAAGGCAGGGTCAGGTTGCTGGGTGGAGGGAGCACCTGGGGCCTCCAGACCAGCACACCGCCTTACTGCAGGGTTAGGACTTGGGGATGGGTATGGCAGGAAAGCCATTTGATACTTACCAAGAGAAGGCAGATTACCAAATTCAGACTTAGAAAGTAGGGAAAACCACTAGACAATTCAGGTATGACCTAAATCAAATCCCTTATGATTATACAGTGGAAGTGAGAAATAGATTTAAGGGCCTAGATCTGATAGATAGAGTGCCTGATGAACTATGGAATGAGGTTCGTGACACTGTACAGGAGACAGGGATCAAGACCATCCCCATGGAAAAGAAATGCAAAAAAGCAAAATAGCTGTCTGAGGAGGCCTTACAAATAGCTGTGAAAAGAAGAGAAGCGAAAAGCAAAGCAAAGGAGAAAAGGAAAGACATAAGCATCTGAATGCAGAGTTCCAAAGAATAGCAAGAAGAGATAAGAAAGCCTTCCTCAGGGATCAATGCAAAGAAATAGAGGAAAACAACAGAATAGGAAAGACTAGAGATCTCTTCAAGAAAATTAGAGATACCAAGGGAACATTTCATGCAAAGATGGGCTCGATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAACTGTACAAAAAAGATCTTCATGACCCAGATAATCACAATGATGTGATCACTGACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCTTTAGAAAGCATCACTACGAACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAGCTATTTCAAATCCTGAAAGCTGATGCTGTGAAAGTGCTGCACTCAATATGCCAGCAAATTTGGAAAAGTCAGCACTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAACAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCTCACACGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCTGCAATACGTGAACCGTGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAGGTACAGGAACCAGATATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAAAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTAACTGTGTGGATCACAATAAACTGTGGAAAATTCTAAAAGAGATGGGAATACCAGACCACCTGATCTGCCTCTTGAGAAATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTATGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCATGAGAAACGCTGGACTGGAAGAAGCACAAGCTGGAATCTAGATTGCTGGGAGAAATATCAATCACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCCGGTCCCATCACTTCATGGGAAATAGCTGGGGAAACAGTGAACACAGTGTCAGACTTTATTTTTTGGGCTCCAAAACCAGTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGAGCAACCTAGATAGCATATTGAAAAGCAGAGACATTACTTTTTGCCAACAAAGGTCCGTCTAGTCAAGGTTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCACAGAAGAATTGGTGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGGGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGCCAGAGGATGAGATGGCTGGATGGCATCACTGACTCAATGGACATGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGATTCATGGGGTTGCAAAGAGTCGGACACGACTGAGTGACTGAACTGAACTGAACTGAAGAGAAGGCAGGAAAATGTCAGTGCTGGGCTTTAGGGAGATGAGTGTGGCAGAAGGGAGATCATAGGTAAGAAGCAGGGAGCTGGTGTGGCCACCAATGAGAACATCTGAGGCTGTGAGTCAGCACTCCATGGCCAGCCAGGGACAGTTCGGCTGGGTTTCCACCTAGACCCCATTGTCATGGTCCAGACAAGACATACGGAGGACCCAAAGTGGGCCGTAGCCCTAAGGTCTAAGTTCTCTACACCTCTGCCCCAACCTCTATTTATACCTAATAGAAGTGTTGGCCACTTGTGTGTGAACATTCCTACCATAAATCCACTGAAAAGCACCAACGTGTGCCTTCGCCCTCTCTTCTGGTCCCCTTGGTTTAAGTACTATGCCTTCAAGGTCCCCTGAAAACAGCTCTGTGCCCGGTGCAGGGAATGATCTTCAGGATTCAGGGACTCCAGCTCCCATTTGTTGCCTCTGTTTCACACCAGTCCCCTGAGTCCGGGTATGTATTGGAGGTTAACATAAAGGAGCCAGTACAATCCTCGGAGACTGAGTTTGCCAAGCTCTGGGTTTGAGGCCAAAGACTGTGATCATAGTCAACACTGTTGTGTGTTCTACGTTAAAAAAAATTTTTTTTTTTTGGTTCTAACATGCCCTCCAAAGGCCCTGACAGACCCCGTGTGGTGCGATGCACAAGCCTCACAGTGAGTCCTGGCTGCTGATGCAGGGCCACGGAGCAGGCCACCCCAGGATGCACCCTGGGGCCCCACAGTGCAGGAGCAGCAGGGTTTGGGAGGTTCTGCATGGCAGGGGCACTGACCTCTGGGTGGAGCACCTCGCCAGACCCTGAGACTTCCTGATGGCTGGAGCTGCATGTGGGTGCTTTATCCTCCAGCAGCTAATTATCTTCACCTCAGTTACCTGCTTGGAAAAAAGAGAGAGATGACATTTAAAGTAGATTAAGTGGATTTTCTTTTATTACTTTAATAGTTCCCAGGCAACATTTGCTTTTGCTTTTCCAACCAGCAGAAGTGATCAGAAAATGATTAGAGTTTCTCCTGCAGATGAAATTCCGATTTTGCATTTATGCTGTTTTATGAGCTGAAACTATCTTAAAAGCCAGTCTATGGTTTTCTCTACTAAAATTAGATTTTTTTTTAAGTTAAGGGTGTATAGCAATTGGAGGATTCTGTTAGCAGTTTGCCCTAAGGCAGTATACTGCGTTCACCATTTTCTTTTAAAAGATTAGTCTTAATTTGATATCATTTAGAGGAGAGCTATGTTCCATTTCATTCAAAAGCAGAATCAAGCCATCTTCTACAGAGGTCAGAGGGAGAAGTTCCTCGAGCATTTGCCCAGGGCATTCCCCTTAGGGTCAGACAGTCTCTAGAATCTCTAGACATTCCCTGGCTCATCCTGGAGAAATTCTAGTAGAAAAGCTGTTACTGAGTTACACACGAGGTCTCCGGCTAGCCCAGTCCTGAAGGAAGACCCATAAATCCCAGGCTGTGCAAAGTCAGCTCACAACATACTTCTTCCTCTAAGCCAGGTTATAGAGAATCACAACTTGCAGCCAGAAAGAAGTCATTCTCAGTAAGGAGAATAATAGCACCCATTCTCCTCTTATCTTTTCAAACGAGGCATTATGTTGACTGGTCAATAAGGATTGCTTTTGTCTTCAGAAATAATGCTGTGTTGTTGCCCTGCCTGAACCACAG
Seq C2 exon
GAACCTACTGGCATGGATCTGCCGCTTCTGGACCCAGCGAGCACCATCACCACCATGACGGGCCCCAGCGCTTTCAGCATCCCGCCCCCGATCCGGCAGAAGCTCTGTAGCAGCCTGGATGCCCCGCAGACCAGGGGTCACGACTGGAGGATGCTGGCCCATAAGCTCAACCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084:ENSBTAT00000039753:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(33.8=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]