DreINT0023194 @ danRer10
Intron Retention
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19373989-19375184:-
Coord C1 exon
chr7:19375062-19375184
Coord A exon
chr7:19374111-19375061
Coord C2 exon
chr7:19373989-19374110
Length
951 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATT
5' ss Score
5.73
3' ss Seq
CTGCTTTGTCTGTTCCACAGGTA
3' ss Score
11.23
Exon sequences
Seq C1 exon
AAGAGTCCAAGGAACGGCGTGAGATTGACCCAGTAGAGGAACCCGAAGCCAAGAGGTCCCGCTCCCAGTCCCCTCTTATTGAAGACTTCACTATGCCCCCGTTCAACCCAGACAACCCCATTG
Seq A exon
GTAATTATTTTTAGCATAGTTTATTACAGGTTTTTTTTTTGGTTATTTACTTCTTTCTTAATTACTATTATTATTTTTAACATTTTATTATTTTTGGTTATTTGCTAATTTTTATTACAATTGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTGGTTATTTACTAACTATTTTTTTAAAAACATTTTATTATTTACTCATTTTATATTTACTGTTATTTTTTAACATTTTATTATAATTTTTGTTATTTTCTAATATTTTATTTACTATTATTTTTAATAAATTTGATCACTATTCTGGTTATTTACACGTTTTTTTTATTTACTATTATTTTTTGCATATTTTATTATTTTTGTTATTTACTCGTCTTTTATTTAGTAATATTGTTTAATTAATTTTATTATTTTTTCAAAATTGTCTTATTTACTATTATTATTGTTTATTATATTTTGTTTATCGTTTTTTTTATTTACTATTATTTCTAACATTTGTTGTTATTTACTCATTTTATATTTACTATTATTATTTTACATTTTATTCACTCATTTTTTACCATTATTTTAGCATTATTTTTTATTTACTATTTTTTTATGCATTTTCTTATTTTAATTTACTTATTGCTTATTTACTGTTATTATTTTTAACATTTTATTATTGTTTTTTAATGTACTAATTTTATTTTTAACATTATTTTTGTTATTTAATTGTTTTTTATTTACTATTATTATTTGTAACATTATTTTATAGATATTATTATTGTTGTTGTAATTTACTCATTTCTATTACTTAAAATTTTTTTTTTTTTTTTTGCATATTTTATTTTTAACATATTTATTATAAAGCTTTGTTTGAAGCTGTGAAATCCTAACTGCTTTGTCTGTTCCACAG
Seq C2 exon
GTATTGATTTTGTGATTCCCAGGACCGGTTTCTTCTGCAAACTTTGCTCTTTGTTCTACGTCAACGAGGATACAGCTAAGAAAAGTCACTGTAGTAGTTTAAAGCATTACCAGAACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169:ENSDART00000160936:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF062207=zf-U1=PU(89.5=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAACGGCGTGAGATTGA
R:
CTCCATGTTCTGGTAATGCTTTAA
Band lengths:
238-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]