GgaINT0018402 @ galGal4
Intron Retention
Gene
ENSGALG00000002478 | MATR3
Description
matrin-3 [Source:RefSeq peptide;Acc:NP_989478]
Coordinates
chr13:1827941-1829046:-
Coord C1 exon
chr13:1828653-1829046
Coord A exon
chr13:1828063-1828652
Coord C2 exon
chr13:1827941-1828062
Length
590 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TGTGGTGTTTACTTCTCTAGGTG
3' ss Score
10.82
Exon sequences
Seq C1 exon
CGATACGTGGGTGGCTTTCCACGGAGCATGGAAGGCTTTGTCACTCTAGATGAGGTTGGTGATGAAGAAGACTCAGATCATCAGAAACTTCGGAAGTCGGGTTTGGCAGTAAAATCTGCTGGCAAAAATGATGATAGTTTGGCAGAAATCAAAGTAGACAAGATTGAGGAGCCAGAGCAGGAAAATGAAACGTTAGAAAATGGTACCAAGACTGAAGATAATCTGAAGGCTGAAGCTGTTGAAGCTTCCGACACCACAGCAGCACAAGATCCTGAGAAAAATGCCCATGAAAATATAGACACCCAGGATGAACAGGAAACAAAGAGTGTCCAAGAGAAAGCTCTTATTCCAGATGAATTTAGGATTGGGCCATACCAGCCAAATGTTCCTGTTG
Seq A exon
GTAAGGCTGTTTTCATTTCTTTTCAAATCTGTCTCTATGCATTGCAGTAGCATTTCTCATTTCATTTGGCTTTTATTTCTGGCAGCGTGTTGCCTCTGAGCCTTTCATTTTAGGGCTCTCCATTCTTCTCTTCTTCACTCCTCCCCTACCTCTAGTATTCTCTTTTTTTTTTCCCCCTCATTTTCATACAGTTTTCCATAACACTTTCCTTAGGCAGAAATTAAATTGGAAGAGGTATGTTTTAGCAACACTAATTCAATTAATAGCACAAATCACAGTAGTGATATTAGCCTAGATTCATACTAACTGCTCAAAACGCACAAATCGGTCTCAACGCTATTAGTTCTTTTGAAGGAATCAATAAAATGGACCCTTAAACTGAAAGGTTGATTTAAAAAAAAGTCTGCACATATTTAGCTGTTACTGTAGGCCCCTGGCTTGAGTAAACTAAACCAAAGACTCCTAAAGACAAAGCAGCTTTTAATGTAAAGTGGATTATGGTTTAAGATTTAGCTTGAAATGACATATGACATTAAAGAAATGATGTAGAGTAGTTCTCTTAGTTTATTTTGTGGTGTTTACTTCTCTAG
Seq C2 exon
GTGTGAATTATGTGGTACCCAAAACAGGGTTTTATTGCAAATTGTGTTCCCTGTTCTACACAAATGAAGATGTTGCAAAAAAGACCCATTGCAGCAGCCTTCCTCATTATCAAAAGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478:ENSGALT00000003907:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGAGGAGCCAGAGCAGG
R:
AATGAGGAAGGCTGCTGCAAT
Band lengths:
342-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]