GgaINT0018402 @ galGal3
Intron Retention
Gene
ENSGALG00000002478 | Q8UWC5_CHICK
Description
NA
Coordinates
chr13:2206296-2207401:-
Coord C1 exon
chr13:2207008-2207401
Coord A exon
chr13:2206418-2207007
Coord C2 exon
chr13:2206296-2206417
Length
590 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TGTGGTGTTTACTTCTCTAGGTG
3' ss Score
10.82
Exon sequences
Seq C1 exon
CGATACGTGGGTGGCTTTCCACGGAGCATGGAAGGCTTTGTCACTCTAGATGAGGTTGGTGATGAAGAAGACTCAGATCATCAGAAACTTCGGAAGTCGGGTTTGGCAGTAAAATCTGCTGGCAAAAATGATGATAGTTTGGCAGAAATCAAAGTAGACAAGATTGAGGAGCCAGAGCAGGAAAATGAAACGTTAGAAAATGGTACCAAGACTGAAGATAATCTGAAGGCTGAAGCTGTTGAAGCTTCCGACACCACAGCAGCACAAGATCCTGAGAAAAATGCCCATGAAAATATAGACACCCAGGATGAACAGGAAACAAAGAGTGTCCAAGAGAAAGCTCTTATTCCAGATGAATTTAGGATTGGGCCATACCAGCCAAATGTTCCTGTTG
Seq A exon
GTAAGGCTGTTTTCATTTCTTTTCAAATCTGTCTCTATGCATTGCAGTAGCATTTCTCATTTCATTTGGCTTTTATTTCTGGCAGCGTGTTGCCTCTGAGCCTTTCATTTTAGGGCTCTCCATTCTTCTCTTCTTCACTCCTCCCCTACCTCTAGTATTCTCTTTTTTTTTTCCCCCTCATTTTCATACAGTTTTCCATAACACTTTCCTTAGGCAGAAATTAAATTGGAAGAGGTATGTTTTAGCAACACTAATTCAATTAATAGCACAAATCACAGTAGTGATATTAGCCTAGATTCATACTAACTGCTCAAAACGCACAAATCGGTCTCAACGCTATTAGTTCTTTTGAAGGAATCAATAAAATGGACCCTTAAACTGAAAGGTTGATTTAAAAAAAAGTCTGCACATATTTAGCTGTTACTGTAGGCCCCTGGCTTGAGTAAACTAAACCAAAGACTCCTAAAGACAAAGCAGCTTTTAATGTAAAGTGGATTATGGTTTAAGATTTAGCTTGAAATGACATATGACATTAAAGAAATGATGTAGAGTAGTTCTCTTAGTTTATTTTGTGGTGTTTACTTCTCTAG
Seq C2 exon
GTGTGAATTATGTGGTACCCAAAACAGGGTTTTATTGCAAATTGTGTTCCCTGTTCTACACAAATGAAGATGTTGCAAAAAAGACCCATTGCAGCAGCCTTCCTCATTATCAAAAGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478:ENSGALT00000041230:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGAGGAGCCAGAGCAGG
R:
AATGAGGAAGGCTGCTGCAAT
Band lengths:
342-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]