HsaINT0100293 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr5:139325296-139326284:+
Coord C1 exon
chr5:139325296-139325662
Coord A exon
chr5:139325663-139326162
Coord C2 exon
chr5:139326163-139326284
Length
500 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
ATGTATGTTTGTATTTCTAGGTA
3' ss Score
9.75
Exon sequences
Seq C1 exon
CGTCGTTTTCCAGGGAGTATGGAAGGTTTTGTCACTCTAGATGAGGTTGGTGATGAGGAAGATTCGGAACTTCAGAAACTTCGTAAATCGGGCATGGCATTTAAATCTGGTGACAAAAATGATGATGGTTTGGTTGAAATTAAGGTGGACAAGATCGAGGAACTTGATCAAGAAAACGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAACACAGAACCAGGTGCTGAATCTTCTGAGAACGCTGATGATCCCAACAAAGATACAAGTGAAAACGCAGATGGTCAAAGTGATGAGAACAAGGACGACTATACAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTG
Seq A exon
GTGAGATTTAAGTCTTTGTTCTTCACCTTCCTCACTCTCCTCAAAACAAACTCTTAGGTTTTAAAATAAGATTTTAAAGTTGGTCTTACATAAGCTGTGATAGCATTTTAAATTTGCTTTGTTTCTATGGGGAACAATTTATAAATCTTAATTGATATATTTTCCTCTCATGCATGTCTCTGATTTTGTATTATTTTCTGTTGTTATTCCACAATGTGTTCCCTTTTTTCGTAAAATTTCTTGCAAGTTACACGCTTTTGTTTTGCTTTTCTGTGTTGTTTTTCTGTATTATATTTCTTTTTTTAAGAATACAGTTAGGTGAGACCTCAAACATCAATTAGGTAAAAGCAAAATATGGTTCGGTTTTTGTTTTTTATCTTAGGCTGTATTGGACTTCTCAAAAACATGTTGTTTCATTTAAATTATGTTGACAGGTGAAATTGTGAATACTAAATAAAATCTTCAGTTTAATTTGTAAGAATGTATGTTTGTATTTCTAG
Seq C2 exon
GTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000280987:ENST00000394800:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAATCGGGCATGGCATT
R:
AAGAGTGAACACAGCTTACAGT
Band lengths:
342-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains