MmuINT0096182 @ mm9
Intron Retention
Gene
ENSMUSG00000037236 | Matr3
Description
matrin 3 [Source:MGI Symbol;Acc:MGI:1298379]
Coordinates
chr18:35747285-35748107:+
Coord C1 exon
chr18:35747285-35747507
Coord A exon
chr18:35747508-35747985
Coord C2 exon
chr18:35747986-35748107
Length
478 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
ATGTATGTTTGTGTTTCTAGGTA
3' ss Score
10.42
Exon sequences
Seq C1 exon
GTGGACAAGATTGAGGAACTTGATCAAGAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGGAAAATACAGAACCGGGTGCCGAATCTGCTGAGAATGCTGATGATCCAAACAAAGACACAAGTGAAAATGCAGATGGCCAAAATGATGAGAATAAGGAGGATTATACAATTCCCGATGAGTATAGAATCGGACCATATCAGCCTAATGTTCCTGTTG
Seq A exon
GTGAGCTTTAAAGATTTTTCTCGTCCCCTTTTCTGTTTCTCCCAACAAACTTATTAAAATAAGACTTAAAAGTTGATCTTATATAAGCTCTGATAGTGTATAAAGTTATATCCCCTGGTGAATTAATTTTATTTTTTTCTAACACTGTTCTATATTTTTTTTTGTGTCTCCTAATTTTGTATTATGTTACCATTCCCACTGTGTTCTCTCCTCATAATGGTTTCTAAAATAACACATTTCTTTTTGTTTTGTGTTTGTTATATATTCTTGTCTTTCATTTTAAGACTAAAGTTAGGTGGGATCTTGAATATCAGTTAAGTAAAACAAAAGGGTAATGTGATATTGTTGGTATTTTTAGTTTAGGCCATACTGGAATTCACACATGTTTTCTGATTCAAATTATATTGACAGGAAAAAAAGATTTGAGACTAAAATTTAAGTTTACTTAATTTGTAAGAATGTATGTTTGTGTTTCTAG
Seq C2 exon
GTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037236-Matr3:NM_010771:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAAGATTGAGGAACTTGA
R:
TAATTTCTGATAATGAGGAAGGCTGC
Band lengths:
342-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: