DreINT0023195 @ danRer10
Intron Retention
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19373654-19374110:-
Coord C1 exon
chr7:19373989-19374110
Coord A exon
chr7:19373883-19373988
Coord C2 exon
chr7:19373654-19373882
Length
106 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
CCAATTTCTCTCTTCTTCAGAAA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTATTGATTTTGTGATTCCCAGGACCGGTTTCTTCTGCAAACTTTGCTCTTTGTTCTACGTCAACGAGGATACAGCTAAGAAAAGTCACTGTAGTAGTTTAAAGCATTACCAGAACATGGAG
Seq A exon
GTACAACAATGTTTTACACTATTATGAAACATTTAGATGTTATATGTCATATTGAACCATTAGATCTATTTATATTAAACTTGCATCCAATTTCTCTCTTCTTCAG
Seq C2 exon
AAATACTATAAGAAGCAGAAGTCTCAGCAGCAGCAGGGTGGCTCTTCATCACAGTCAGCAGCCAGTCAAGGTTCAGCATCTGAATAGCCTTTATTAAGAGCTTTTGTTTGTTTAGTTTCTTTTCTTTGTATTATTGCTACCGGATGGGTCCAATTGCTTTAATTTTATTTGTTCTTGTTTAGAATTTATTAGCTCATGCTAAATAAAGACATCACAAACTCAAGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169:ENSDART00000160936:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF062207=zf-U1=PU(89.5=82.9)
A:
NA
C2:
PF062207=zf-U1=PD(5.3=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAGGACCGGTTTCTTCT
R:
ACCCATCCGGTAGCAATAATACA
Band lengths:
256-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]