RnoINT0090025 @ rn6
Intron Retention
Gene
ENSRNOG00000019875 | Matr3
Description
matrin 3 [Source:RGD Symbol;Acc:3052]
Coordinates
chr18:28386856-28390696:+
Coord C1 exon
chr18:28386856-28386977
Coord A exon
chr18:28386978-28389663
Coord C2 exon
chr18:28389664-28390696
Length
2686 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATTCTTTTTTCCCCCTCAGAAA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAG
Seq A exon
GTAAGGCTGAAGAGGAGACTTGTGAAAACTAACAAATGATAATACGTTATAGAAATAAGTGAGATACAATGTGTGTATGTCTCTGGACCCAGCATAATTCTGAGTCATTTTTCCATAATTGCCTGGGCTTTAAGGAGTTTAACGGGGTCTACAAATTTGAGTCTCTTTTTTACTCAAATGGTTAAACAAAATTTATTTAGTACACCCATAATTCTTAGACTTGGGAGATGAGATTGAGGAGACCATATCCTTCTTTAAGCTATGTGGCAAATTAACTACATTTTATGCAGTATAGTTTATCCATGTTTTCTCAAACTATTCAAATTTCAAAGATGCTAGGGGTCTGAACATTAAATAGAACACTTAGGCCTGGCGATGGTGATGCATGCATTCCATCACTCTGCAGGCAGAGGCAGCCCAATCTTTTGAGTTTGAAGCCTGCCAGGTCTGTAGATTGAATTTCAAGACAGCCAGGATTACACAGAGAAACCTTGGCTCAACAAAAGAAATAAAGAAATAGAGCAATTAAAAATTTTTGAGTTTCTGTGGTGCAGAGTTCTGTTCTATTTATTCATTTTAGAGACTGTATCTCCCTTTCTAGGTCATACGGGCTTTGAGATTCTTCTGTCTCAGCCTCCCAAAGTACTGGGATTATAAATATGAGTTACCATTTAAAGATTATTATTCCAATGTTACTCACTAATGATGTTCTTACTTATACCCAGCACATTATCTCTGCATTACACTATAAATGAGTAAAACCCATCAGAAAACAAGAAAAAGTCCTACTGTGTTTTTTAGTTAGGAGCCTCTATAAGGCCTGCCTGAGTATTAGGAAATACAAGCAAACTTAAAAGTAGTACTGAACTCAATCGTAGGTAATTTGGTTTTTTATACTTTGTCATTTATAATGTTACAATTGCCACCTGTTGAATATACCTAATCTGCCAGTCAAAAATATTCTAACATGAGACTGGGGAGATGGCTCAGTGGTTAAGAGCACGGACTATTCTTCCAGAGGTCCTGAGATTGAGTTTAATTCCCAGCAACCACATGGTGGCTCACAACCATTTGTAGTGAGATCCAGTGCCCTCTTCTGGTGTGTCTAAAGAGAGTGACAGTGTGCTCACATAAAATTTTTTTATAAATTAAAAAAAAAATACTCCATAATACTGTGGTAGCTTAGTAGCAGAAATAAATTATCATCAGAATGTTGATACATTTAAAAATATTGTGTGAAGTTATATTTCAAGGGCTAGGGAGATGGCTTAGTTGTTAACCGCTTGCTATGAAAAGCAAGAAGACTGCTCCCTAGAACTCAAGTAAATACATGGTTGGGGTGGTGGCTAGATTAATTCTAGCTGTCAAAGGTGGAAATGGAGGAGGCTGGCTAGTGAAACCAGCTTTCTCAGCAAGTTTTTGGTTTCATTGAGGGACCCTTCATTAGCGAATGAGGTTGCAGGCAATCAAGGAAGATCACTGAGATAATCAATCGTGTGCTTAAAAATAAAATTACCTATAGGGTATAGAAATGCAGCTCAGTGGCAGAGTTCTTGGTAGCATGTGTAAGGTCCTGGCTTTGAAGCACAAAAATGAAAAATAGAAAAAGAGGTGTAATTATTACCTTTGGACTAGTTTTTATGGGGCCTCATCCAAATCTGAACTCCCTAACACTTCTGGTCCGAAGTGTTTCAAACGAGAAATTCTATTATCTTTGACAACTGGTGGATAATAGTAGTCTTGTATCTTAATGAATAATTTGTCCTTTGTTATATCATTTTTTGTTGTTTTCAAATGTATCTTTTTGTAATCTATATGTTTCCTGCCATTAAGTGCTAACAACCATTTACTTTGGGATGGATATGGCTTCATTCATATTGGAAATACATTGGATTTTAGGCTATGTGGGGTTAATACCAGTGTTGTTACCTAGAAGGTTATGCTTTATGACTTAAATATTTCCTTTTTCCTTCTTCATTAAAGAAAATGATGAATCAGCTGCATTAAAAAGTCACTAGGTAGTTTATGTTGCTCAAATTGACACTCAACTGTTTTGACACTTAACTAAATAGATGTTTTGTGGGGTTTTTTCCTTCTGTTTTTTTTTTTTGTTTGTTTGCTTGTTTGTTTTCATTTTCTTTTTAAGGATATAATGGCTTTTAACCCTCTCAATCTGCAATAACAAATATTGCTATATTTTAACCATAAATAAAGAAACAAATTCTTTTAAAATATCCATGTTCCCTAAAAGTCTTAATAGATTGGTGTCTAGAAATTATACATTGGAGATTATAGATGGTCAGCTACCTCTGTTGTAAATATAGTCTTCTTAGAGCACAGCCAATCATAGCCATAGTCTTTCAAGTACTGTCTATGGCTCTTTTAGGTCAGTGAAATTGTTACAGCAAAGATCTAATCTAGCTATTCCGTATATGAATTCTCAATTGTAAAAGTTAGGGTTAATTGCACATTGAAATATCCATTTTTTCCACATTTGCCCATTTTTTTCATAATTATTGTGTCCTAGCCAGTTTAGTTCTGTATGTTAAGATTAACCCATTTATAAAATGTTAAAGGATTAGTGTTAAGTCCCTAAACTTGGACTGAATATTTTATTTTATAATTAATACATATACTAGGTGTTTCTTAAATTACTTAGTCCCTGTAATTCTTTTTTCCCCCTCAG
Seq C2 exon
AAATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAGGAAACTTAAGATGTACAAGAAGCTTAATTATTTCAAAGAAAACAATGGTTCTTTGATTTTAATGTTAACCTTTTTTAAATACAATACTGATAGTTAGAAAACTACTGTACTCTTTTGTTTTAGTGGAAAATAATAGATGTCTGTTCATGTGTTTAAGTGTTATAGCAAAAAGTACACATACGGTTAAGTTAATGAAAAAGTTTTTGTTTCATCAGTGACAACAGACAAAAGTACTTCCTAGAGATTTGACTGTTGTAAGTAAGCTATGGAAAACAACTTGCACCACTAAGAGAAAGATAACATAGAACCATTCAGAAAACTGAAATTTAGTAGTTTAAGGCTTCAAAGAAATGTCAACTTTTGATTCCATTCAATAAAGTACAAAACCAATTGTATTTTTTATTACTTTTCATCTGAAACATTCCACATTTTAATCTGAGCCTTGCAGACTTTTCATTTGACTTTGGAAGCTGTTTCGGTTGCATTGCATTTTTAGAGAACTTCATTCATGTGAGATTGGAATTCAAATGCAGGTGCAGTTTTCTTTTAATGTCATGCTGTTTAGATGATAAGATATATTAAGTAATTGGCTTTAGATTTGTAATTTTTTTCCTCTGAGTTCCTGCTAGGTTTTGTATTCTAGTAGTCAATGTTATTTCAGTGAAATGTAAAAATATTACCGTTCTCTTTGACCAGTATTAATTTCTTGAGAACCTATTGCTTGTCACTTGAATCCTGTAGCTGTCAAACATCTCCGGTATAAGCAACATTTGATTTTTGAAGTGTGTAAACCATCTATATTTTCAAGATGTAATTTTACATTTCTGCATTTTAAAAGTTTGGCCATAATTCTAGAAGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTGTGAGCAGAAATTTGCATGTATAATCTGTGTTTACTTGTAACTCTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTACTGAAGTGAATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019875:ENSRNOT00000026949:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]