MmuINT0096183 @ mm9
Intron Retention
Gene
ENSMUSG00000037236 | Matr3
Description
matrin 3 [Source:MGI Symbol;Acc:MGI:1298379]
Coordinates
chr18:35747986-35751699:+
Coord C1 exon
chr18:35747986-35748107
Coord A exon
chr18:35748108-35750033
Coord C2 exon
chr18:35750034-35751699
Length
1926 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATTCTTTTTCCCCCTTCAGAAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
GTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAG
Seq A exon
GTAAGGCTGAATATAAGAGGAGACTTGTGAAAACTAACAAACAATATACTTTACAGAAATAAGTGAGATACAATGTGTGTATGTCTCTGGACCCAGCATTATGCTTTCTCATTTTTCCAAAATTGCCTGGGCTTTAAGGAGTTTAGCGGTTTTTACAAACTTGAGTCTCTTTTCATTCAAATGGTTAAGCAAGGTTTAGTGTTGCCACATATTGAATATGCCTAATCTGCCAGTTAAAAATACTTCAACATGGGGCTGGAGAGAAGGCTCCAGTGGTTAAGAACACTTTCTGTTCTTCTAGAGGTTCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTTACAACCATTTGTAGTGGGATTTTATGCCCTCTTCTGGTGTGTCTAAAGAGAGCCAAAGTGTACTCACATAAATTTTTTTAAAATATTAAAAAAGAAAAAACCTCCCAACAAAATACCACATCTAGCTTAGTAGCAAAAATAAATTGTTATCAGAATGTTGATATACTTAAAAATATTGTGCAGTTATATTTGGAAGATTAGGGAGGTGGCTCAGTTGTTAAACTGCTTGCTGTGAAAGCTCCCCAGAACTTGGGCAAATACTTGTAATTCTAGCTGTCAAAGATGGAAATGGAGGAGGCTGGTAGTAAAACCAGCTTTACCAGCAAGATTTGGGTTTGATTGAGAGGCCCTGCATTAGTGAATGAGGTTGTAGGCAATCAAAAAAGATTCCTGATAACCAATCATGTACTTAAAAATAAAATTACGTATAAGAGATATAGAGATACAGCTTAGTGGCAGAGTTCTTGGTAGCATGCATAAAGTTCTGACTTTGAAGCACTAAAAAGAAAGAAGTAGAAAAAAGATACAATTAACTACCTTTGGACTGGGTTTCATGGGGCCTCATCCAAATCTGAAAGCTCTAAAGCTTCTACTCCTAAGTGTTTCAAACAAGAGAAACTCTGCCTGTATAGCATTCAGTTATCTCAGCACGTTTTCTTTAACAACTGGTGGATAATTGGTAGCCTTGTATTTTAATGAATAATCTGTCCTTTGTTTTATCATTTTTTGTTGTTTACAAATGTATCTTTTTGTAATCTATGTTTCCTGACATTATGGTTATAAGAAAAGAAGGGTTATTTTCAGTACTAAGAACCATTTACTTTGGGCTATATGGCATCAAAACCAGTGTTGTTACCTAGAAGGGTACACTTTATGACTAAGTATTTCCTTCAGTATTGAGAGAAATGTATGAATCAGCTGCATTAAAAAGTCAGTAGACAGTTTATTTTCCTCAAATTGACACTTGACCTTTTTGACACTTAACTAGATGTTTTGTGGGGTTTTTTTCCTTCTGTTTTTTCGTTTGTTTGTTTGTTTTCATTTTCTTTTTAAGGATATAATGGCTTTTAACCCTCTCAATCTTCAATGACCAATCTTAAATATATTTTAACCAGAAACAAGCTGAAATCCTTTTAAAACATTCTTCATGTTCCCTTAGAATCTGTGTCAAGAAATTATACATTAGAGATCATAGGTGGTCCGTCACCTCTGTTGTAAATAAAGTCTTATTAGAGCACAGTCCATCATAGCCATGATCTTTCAAGTATTGTCTGGCTCTTTTAGGTCAGTGAAATTGTTAGAGCAAAGATAATCTAGCTGTTTCTTCCTATATGAATTCTCATTTCTAAAAGTTAGGGTTAATTGCACATTGAAATATCCATTTTCCACATTTGCCATTTTTTTTTCATGATTATTGTGTCCTGAGCCAGTTTAGTTTTGTATGTTAAGATTAACTCATTTGTAAAATATTAAAGTGTTAGCATTAAGTCCTTAAAGTTGGACTGGATGTTGTATTTTATAATTGATACATATTCTAGGTGTTTTTTAAAATTACTTAGTCTCTGTAATTCTTTTTCCCCCTTCAG
Seq C2 exon
AAATTTCTGAATAAATTGGCAGAAGAACGGAGGCAGAAGAAGGAAACTTAAGATGTACAAGAAGCTTAATTCAAAGAAAACGATGGTTCTTTGATTTTAATGTTAACCTTTTTTAAAATACAATACTGATAGTTAGAAAACTACTGTACACTTTTGTTTTAGTGGAAAATAATAGATGTCTGTTGTGTTTAAGTGTTATAGCAAAAAGTACACATACGGTTAAGTTAATGAAAATGTTTTTGTTTCATCCGAGTGACAACAGACAAAAGTACTTCCTAAAGATTGACTGTTGTAAGCTATGGAAAACAACTTGCACCACTAAGAGAAAGATAACATAGAACCATTCAGAAAAATGAAACTTAGTAGTTTGAGGCTTCAAAGAAATGTCAACTTCTGATTCCATTCAATAAAGAACAAAACCAATTGTATTTTTTTTTACTTTTCATCTGAAACATTCCACATTTTAATCTGAGCCTTGCAGACTTTTCATTTGACTTTGGAAGCTGTTTTGGTTGCATTGCATTTTTAGAGAACTTCATTCATGTGAGATTGGCCATTCAATTGCAGGTGCAGTTTTCTTTTAATGTCATGCTGTTTAGATGATAAGAAATATTAAGAATTGGCTTTAGATTTGTAATTTTTTTCTCTTGAGTTCCTGCTAGGTTTTATATTCTAGTAGTCAATGTTATTTCAGTGAAATGTAAAAATATTCCCGTTCTCTTTGACCAGTATTAATTTCTTGAGAACCTATTGCCTGTCACTTGAATCCTGTAGCTGTCATACATCTCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAAACCATCTATATTTTCAAGATGTAATTTTACATTTCTGCATTTCAAAACCAGTTTGGCCATAATTCTTGACGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTGTGAGCAGAAATTTGCATGTATAATCTGTGTTTACTTGTAACTCTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTACTGAAGTGAATACCAATAAAAAAAAAAAAAACTTAGGTCATGTTGATTGGTTGGTTAAACATGTTTGGATGTTAACCAAAATATTTGTCCGTTGTGGCTTTTTATTCACTGTTAAATTTTTATGCATGCTTTAACAAATTATTCTTAAGTCTATATTGGTGTTCTAAAAACTACTAAAGATTTTGGTTTAGAGCTGATGGACTTCTTGTTCTTGTTACATAACTAAAAATGAGACTTTTTCTTTAACCTTACAGTTTTAAATCTGAGGATAAAGAAATTGCAAAAGTTCAAATTCAGAGATATCTGTGCCTTTAACAATAGAATTAAAGTAGCATTGGAAAGATTCGTCTTGTCGCTGCTTCAAAATCAAGAAGGAATTTTTGCTGTGTTGAATAATCTGAAGACCCAAGAACAGCTTTAATTTAAATCGGTGACAAATAGTAATTGTCTTTCAAACACTCCGACAGTTGTATTTAAAATTATAATTTAAACATATTGTTGGGTAAAATTTTAGTAACATGCACAAAAAATCCTTGCTAATCTTTAGTTTTAGCTGTTACTAATTATATGCTTTTGTAAATTCTTTTTTCCTTTCTTTCTTGCTTTCTTTTTTCTAATCTAACAGCAACTAAAATAAATTGTGGATAGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037236-Matr3:NM_010771:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCAGCAGCCTTCCTCAT
R:
AGTGGTGCAAGTTGTTTTCCA
Band lengths:
356-2282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: