DreINT0023236 @ danRer10
Intron Retention
Gene
ENSDARG00000012642 | ZNF814
Description
zinc finger protein 814 [Source:HGNC Symbol;Acc:HGNC:33258]
Coordinates
chr24:2335075-2338305:+
Coord C1 exon
chr24:2335075-2335392
Coord A exon
chr24:2335393-2337702
Coord C2 exon
chr24:2337703-2338305
Length
2310 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TTTATGTTGCGTATTTTCAGGGG
3' ss Score
8.66
Exon sequences
Seq C1 exon
AAACCTCCGCAAAGAAGCAAAGTGGATCTGAGAACGCAGCAGGAAAACCAAAAGCGTCCTCTCAAGAAAAGCCGTTTGAGTGCAGTCATTGTGGGAAGAAATTCAGTCAGCAGTGCATGTTTAAAATCCACCAGCGGATTCACACCACTGAAAAGCGGTATAAATGCACCGAGTGCGGCCTTAGCTTTCGCTGGAGGAGGAACCTGATCTCACACCAGAGCACCCACCCGGGACAAAACCCTCTCCAGTGTTCAATGTGCGATCAAACGTTCATCTCTGAGGCTGCTGTAAAGAGCCACCAAGATACATTTCACTCTG
Seq A exon
GTAAGATATATTCAAGTAGCAAGCAATGGGAATGAGTATGTGTAATCCTTCAATAAATGCTACAAGAAATAAAGGTCACGCTTTAATTTACAATTCACTCTATAAACAAACCATTAACCAGGACTTTTAGCTAAATAAACTACTAATTAGCTGATTATTAATCGATAGTAAGGCAATAGTTGAGTTTAGATATTGATTAGGGATGTAAAAAAAAGACCATACTTTATAAGTGCTGATATACAGTTAATATCACAATAATAGGCAGGTAATAAGCCAGTGTTAGTGAAATAACATTTCTTGGCTATAAGAAACTCATTCATTCCTTTAGTTTCTTTTCGGCTAAGTCCCTTTATTAATCAGGGGTTTCATAAGACTGTCATCACACCTTTATAAAATTGACATGATCTTGAATATTAATGAGATCATATGCATGCCATTAAATGTCATTAGCTCAGTTGTCACTTTAAATGCAAAGATGACATTGATTGAGGTGTCTTTGACATCACCAAGACAACATAACTTGTCATAAACCTGTCATAAACATGACTGTCATGAGGCGTTATAGTTGTCAAGGTTTTTAACCGCAGCATTATTTTTTTTTGACCTTAACTAAAGTGGTGCAAATTGAATTTGTCATGTACAGTTGAAATCAGAATTATTAGCCCTCTTTAAATTTTGTTTCTTTTTCCAATATTTTGCAAATGATGTTGAACAGATTCAGGAATTTTTCACAGTATTTCCTGTAATATTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTCGGCTTGAATAAAAGCAGTTTTTAATAGTTTTAAAGCCATTTTAAGGTCAATATTATTAGCCCCCTTAAACTATATTTCATTTTTGATTGTCTACAGAACAAATCACTGTTATACAATGACTTGCCTAATTTCCCTAATCAACCTAGTTAATCCTTTATATGTCACTTTAAGCTGAATACTAGTATCCTTAAGAATATCTAGTCAAATATTATGTGCCGATAAAAGAAATCAGTTATTATAAATTAGTTATTAAAACTACTATGTGTAAAAAATTCTCTCCATTAAACAGAAAGTAGGAAAAAATATACAGGAGGGGCTAATTATTCTGGAGAGCTAATAATTCTGACTTCAACTGTATGTGTCATTAAATATTAATGATGCTGTTATAAACGAAGTACATAGTATTGACACGGTTTAATTCACACTCATAGTATTAAAACTCTAAATCACAAATTAATTCTGTTCCACTGAAATAAAAGGTGTCAGAAAAATATTAAAGAAACATTATTAATAGACCCCTTAGGAAAAATAGTTTTGGATTGGTTACAGAACAAAATAGTGTTGTCCAATGACTTGCCTAGTTAACCTAATTATATATATATATATATATATATATATATATATATATATATATATATAATTAATATATATTTATACATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGCTTCTGTGGTCAATATTATTATCCTCCCTGTTCAATTGGCTACAAACCACAAAACTGCCCAATGACTTTACTAATTATCCTAGTTAAAGGTGCAGTAGGTGATCTTCCACAATGATAACAGCTTAGCATAAATCTCTGAATCACAGTTACTCCCCTGCCATCTATCCCATAGATCTATCCCATCCCATATGTATATGTGTGTGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGTGTATATGTATATATATATATATATATATGTATATATGTATATAAATAAATACACACACACACACACACATATATACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATGAATGTATGTATATATGTATATGTATGATATGTATATATATTATTATCGTTCAATATTTCTCAGTGATGGGTTTGGCTGGAAGGGTATCCGCTGTGTAAAAAATGTGCTGAATACGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGAACTGTGCCGACAAGAAAATTAATGAATGAATTATTGTTCAATATGGATTATAGTTATCAAGCTTGCATTTTTGCCATATCGCCCAGCCCTAGTCTGTATACATTAAACGTATTTATATTTTTACGTATTAATATTTTTAAATTGTTAATGTTTTTTATGTTGCGTATTTTCAG
Seq C2 exon
GGGTCTCCCACACATGCAGTTTGTGTCTGAAGACATTCACTAAGTCGGCAGGTCTCCGGAAACACGTGCGTTACGTTCACGAAGGAGAGCGCCCTCACAAATGCACCGAGTGTAACAGAGGATTCGTTAAAGTGTCGGATCTGGCGCGTCATCAGCGCCGCCATCATTACGACCGCGGAAACCAACTCTTCCAGTGCTCGGAGTGTGAACGCAGCTTCAGCCACCCCAGCAGTCTGGTCCTACACCGGCGCACACACACCGAAGAGAAACACCAGTGTCCTCAGTGCGACAAGATCTTCAACCAGGCGGGGCACCTGAAGGTCCACATGCGCACACACACCAAGGAGATCAAACCCAAGTTCGAGTGTCCTGATTGCGGGAAGAGTTTCGGACAGACGAAGGATCTGATGGTGCATCAGAGGGTCCACACTGGAGAAAAGCCATACCAGTGTCCGCAATGCAAGAAGAGCTACAGGCAGTTTGCGCATCTGTCTGTTCATCTGCGCAGTCACACGGGGGAAAAGCCCTACCAGTGTCCCATATGCCTCAAGTTCTTCGCCCATTCGTCCTCCATGAAGAAACACCTGCGTGTAATGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012642:ENSDART00000132530:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.134
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(78.3=33.6),PF134651=zf-H2C2_2=WD(100=23.4),PF134651=zf-H2C2_2=WD(100=24.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=13.4),PF0009621=zf-C2H2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=12.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]