BtaINT0165896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016496 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr5:32104860-32106571:+
Coord C1 exon
chr5:32104860-32104973
Coord A exon
chr5:32104974-32105816
Coord C2 exon
chr5:32105817-32106571
Length
843 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GTATTTTCCTTTTTCCACAGGAG
3' ss Score
10.98
Exon sequences
Seq C1 exon
GATTTCCAATTCCCAAACTGGATATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCCAGACTTAGAAGAGAGGGACATTCTGAAGGTCACATACACAG
Seq A exon
GTGATGATGTATGATAGACTCAGCCGCGACCTTCGCCCCTTTTGGAGGTTTATCATTACATGTCCCTCCAACCCCTCCTCTGCCTCAGACAGTTATAGCATTGAATGGTTTAGAGATCTTTTTCTTCAAAAGCAAGACTGTAACATAATAATTTAGAGGGCAGGCTCTAGCGCCAAACTTTGTGGATCTGAATCTAGGACCATTCCTGTGGAACCTTGGAAAAATAATTAACTTCTCTTTGAGTTCCTCATCTATAAATTATTATGAGATTTAAATATGTTACCATAGTCGAACAGTACCAAGCACATAGTAAGCACTCAATAAATGTTAGTTGTTGTTGTTCAACCTCCCACCCATTGTAGAAATGCCTTCCACAATGTCTCCAGTGTTGCTGACAAGGTGTCACCTGGCCAGTGATTTCAGACCATTCCTCACCTCTCTTCATGGTGATGGTGATTAATAGTTTTTTTAAGTGCTAAATAAATAATAGTAAATAAATAGATAACAACAATAGCATGGACTATTTAATAGTGTCTAACATATGCAGGTACTAGTCTATCTGTCTTACAACATCTACCTTATAATTATTCCCATTTTGCAGAAGAAGACATGAAGGCCTACAGAAGTGTAGTGGGAAAACAGATTTTCTGGGTATATGTCTCCTAAGTCTAAGCTTTAACCACTGTACCTGTTACACTGTCTTGTACAACATTAAAATCTGTTCTCTCAGCCCTTATGGGGTGAGGTTTAGACCCTAATAGGCATCACACAGCCTCATTTGTGACTAAGTCCTGGGCTCCTCGTGACTCACCTCTTGGGGTCTGTATTTTCCTTTTTCCACAG
Seq C2 exon
GAGACGGAAGTGAGCACGAGGGGGATACCCCTGAACTAGAAGCAGAGCCTCCCAGAATGTTATCTAGTGTGTCTCAAGATACTGTTCTCTGGAACCCAGAGCAGGATGCAAACTGGGATTCCATGCCCAGAAGCTCCAGAGGCATGCTCCTAGGCCCACCTTTTCTTCAGGAAGACAGCTTCTCAAACCTTCTGTGTAGCACAGAAATGGATTCCCTGTTAAGACCACACACGTGCCCCCAGTGTGGTAAACAGTTTGTGTGGGGCTCCCACCTGGCCAGGCACCAGCAGACACACACTGGGGAGAGGCCCTACAGCTGCCTCAAGTGTGAGAAGAGCTTTGGGAGAAGACATCACCTGATCCGACACCAGAAAACCCACCTACATGACAAGCCCAGCAGGTGCCCTGAGTGTGGCAAGAATTTCCGATGCAACTCCCATCTAGCCAGCCACCAGAGAGTGCACGCAGATGGCAAATCCTGCAAGGGCCAAGAGGTTGGAGAGAGCCCTGGGGCTAGGAAGCGACAGCGTGCGCCACCTGTGCCAAAGTGCCACGTGTGCACTGAGTGTGGGAAGAGCTTTGGCCGACGGCACCACCTGGTGAGACACTGGCTGACACACACCGGGGAGAAGCCCTTCCAGTGCCCACGCTGTGAGAAGAGCTTCGGCCGCAAACATCACCTGGACAGGCACCTGCTGACCCACCAGGGACAGAGTCCCCGGAGCAGCTGGGACAGAGGGACGTCTGTCTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016496:ENSBTAT00000021929:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.3),PF138941=zf-C2H2_4=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=10.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGAAGAACAATGGGTCC
R:
GGAGCCCCACACAAACTGTTT
Band lengths:
342-1185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]