MmuINT0179632 @ mm10
Intron Retention
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98285588-98290591:-
Coord C1 exon
chr15:98290478-98290591
Coord A exon
chr15:98289221-98290477
Coord C2 exon
chr15:98285588-98289220
Length
1257 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCATTCTTCCCTCCCCATAGGAG
3' ss Score
11.2
Exon sequences
Seq C1 exon
GGTTTCCCATCCCCAAATTGGACATGCTTTCTCAACAAGAGGGAGGAGAAGACCAATGGGCCCCTGACCCCCAGGATGTAGAAGGAAGGGACATCCTGAAGGTCACATATACAG
Seq A exon
GTAAGGACCTGGAAATACTCTCAAGGGTGTCATCTTTATAGGTCCCTAACCAGAAAGTTTTTGTTTTCTAAAAGCAAACCTGGGTGCAGAAGGTGTGGAAGTCAGGCTGTGCGGGTTTGACCTGTAGCCCATACCCGTGAGAACTTGTATCTAAGTTATTACAGTTAAATGTGTTAACACCCAGGAGCAGCAGACGAGTGTCAAAGCACACAATAGACACTCGACGAGAGCTGACACTGGCAGTCAGCATCCGAGTCACCGTAGAGATGTCTTCGAGATCTATCCAATGATGCTGACAGCTACCAGCGATGACTGCAGCTCACACCTCACTCTCGTTCCATGTGGAAGTGTGAAGATGGCGCCTAGTAGTGATGAAGAGTAGTAAATAGTGTTAAGAAAATAATGTTGGAAAATAGATATTAGGGAGAGCATTTATCACTTGCTGCGTCCTTACCAAGAGCAGATATGGTTATCTTAAGAAGTTCAGCCCTAACACACACACACATACATACACACACACACACACACACATACACACATACATACACACACACACATACATATACCCACCCACATACACACACACATACATACACACACACATACATATACCTACCCACATACACACACACATACACACACACATATACACACACATACACTTTCACATACACACACACATATACACACACATACACTTTCACATACACACACCCCAACACACACACATACATATACCCACCCACATACACACACACATACCCACACACATACACACACATACACACACATACACTTTCACATACACACACCCCAACACACACACACATACATATACCCACCCACATACACACACACATACACCTACACATATACACACACATACACACACACATATACACACACATACACTTTCACATACACACACCCCAACACACACACATACATATACCCACCCACATACACACACACATACACCCACACACATACATACACACATATACACACACATACACTTTCACATACACACACACACACACACACACACACAGAAAGAAGAAATGAAGACTTGAAAAAGTAAGGTGTCTCGGATGAAAACTAGGCTTTTGAAGACCTCTGCAGTTGCTATGCTAGCCTGGGTTTTCCTAGCCCCTCTGGGCTAACATTTGTCATCAGGCAATGTTCCCTGGGACTTGGGTACTGGGATCCTATCTTTGGACTCTCCTTTTACAGAGCTGCATTCTTCCCTCCCCATAG
Seq C2 exon
GAGACGGAGGTGAACCCCAGGGTGATACTCCTGAGCTACAGGTGGAACCTCCCAGAACATTATCCAGTGTGACTGAAGATACTGCTCTCTGGAACCCAGGGCAGGGTCCAAGCTGGGAGTCCATGCCCAGGAACTCCACAGGAATGCTCCTAAGCCCACGCTTCCTTCAGGAGGACACCTTCTCTCGCCATCTACACAGAACAGACACAGACTCTCTCTTAAAACCACACACGTGCCCTCAATGTGGGAAACAGTTTGTGTGGGGCTCCCACCTTGCCCGACATCAGCAAACCCACACTGGAGAGAGGCCCTACAGCTGCCTCAAGTGTGAGAAAAGCTTTGGGCGAAGGCACCACCTGATCAGGCACCAGAAAACCCATCTGCATGACAAGCCAAGCAGGTGCTCTGAGTGCGGCAAGAGTTTCCGATGCAGCTCGCACCTGGCCAGCCACCAGAGAGTGCACGCAGACAGCAAGTCCTGCAAGGGCCAAGACTTTGGAGAGAGTCCTGCGGCTCAGCACTGCGTGCCTCCCGTGCCAAAGTGCCATGTGTGCACTGAATGTGGGAAGAGCTTTGGCCGGAGGCACCACCTGGTGAGACACTGGCTGACCCACACCGGGGAGAAGCCCTTCCATTGCCCTCGCTGTGAGAAGAGCTTTGGCCGCAAGCACCACCTAGATAGGCACCTGCTGACCCACCAGGGACAGAGTCCTGGGAGCAGCTGGGACAGAAGGACAGCTGCCTTTTGAAATCTGTCTCTTCTGTAGCCATGGTCATATCTGTCAGCCGGTGCTACCAGCAGCCACTGCCAGAGCTGGCCCTCTCCTGTACCCTGAGGGCCAGAGTATTTCTCACCATTTCTGTGAGACAACGTGGGAAAACAGAGTTCTCTGGGCAAAATTGTGGGAAATGGTGCAAAGTATGTATGTGTGAGGCTATTCATGCTGAACCTACTCTCAAGGGAACCAGCAGTGATAGCTGAGGTCCATTCTCACTGGTTGGGGTCCATGTGGTACCAGTTCCCAAGTATTTACTCTACACAGAGAGAAAGTGAAAGCGGCTGTTAGTATATCAAGGGCTCTGAGAACCCCCACAGTCAATTTCTATTCATGTAATGTTTCCTAAATTTGTTTGGCTCCAAGATCTACATCAAATTCTACAGAATGGGTGACTCCATGAAGTACTGGGCTAAGATGAAAGGAAGAAACAGGAAAGAGATGGTGATCAGGCATTCGGAGCTTGAGAGCAAGGGGCCAGACACTCTCATGTGGGTCTGCCTCCTCTCTTCCTCTTCTCTCTTCCCCTGTGATCACATGCCTCTCACTCCTCCCTCTGAAAAGTATAGAGTGAGCTTTCACTCCCAGTTCATAGTCCCTCATCCTGTACACACACACACACACACACACACACACACACACGTTCAACATGCACATACCACACACAACCACATGGATGCATATGCACACACATGCACACATGCTACACACACACACACACACACACACACAGCTGAGAGATCAGGTTACAGAGCTAAAGAGTGAACTTTGTTACCCAAGTAATCAAGGCCCACACAGAAGGAAAAACTATCCCCTTGAACAGAGCTTTCTCTTGTCTGTGTTTTTGTGTCCGTGTGTGTACGTGTGCAGGGTCTTTGAAGACAGCATGCTCAGTGCGAAATGTACAAGTTAGGTTTTCTAGGAACTGTGTTCTAGGGATAAGGGTAGTGGGGACGGTATGAGTTTTGGTTTTGTTTAAACGTATTCTGAGTGGTACAGGGAGTCGTAGTGGGATGGTGTAACAATGGCTTGAGTTGTGTACAAAGTTTTCCTTGGTATTCCTGGGATGTAGACAGTTGTGGATTTGTATATCTAGGTCTGAATCCCTGGGAGGAAATTCCCTTCCCCTACAGAGACGGAAAGGGACAGTGACTTGTTGTTGTTGTTGACCTCGAGCAATGTGATGGTGGTTCGTGCTGCGTGGGGTTCTGTCTTGTTTTGTTTCACGTGCTAAAACTATCAGGACAGGGGTCACAGCCCTGGGAGTTACTCTTGTCATCCTAGTTTGGCTTTCATCAAAGGGAAGAATGGTTGCTGAGCCTCTCATTCTCCCAGGAAAAAGAACCGGAGGAGAAAAGGCTGTTGCTTACCTTGCCGACCTGAGGCTACTGAGCTTCCTGAAGGTGTTCCTGCTGCCTCTGGAAAGGGCTTCACACTTTGGCTCTTGCCTCTGAGGTTAGCGCCTGCACCAGGGTTCAGACAGATGTCCCCATGCCTGTCAGTTCACGAGTTTTCACTGTTTTTTTCTTTTTGGTGACTGTGTTAATACACATCTTACAACTTAACCTCTATTTAAGAGAAGTTTGGAGTCAGGGAGGAACAGAAGCAAAGAATGTAAGAGGGGGTGTCTTCAAGGCTCACGCACGGGCTGCTGCTTCTCCTTGAGATATTTATTTCTCGAACACTGTTAGAATTAGCCAGAGAAGACACAGGAGGAAGTGATTTTCAGCGATCTAGTTAATGAGTGCTCTGCTTGAGAAAAGCTGGGTGAATCAGAGAGAGCTCTTGGGCCCTTGGCTCGAGAGGAATGGAAACAGAGTTATTCTGCTGACTAGGCATTTTGGTTAAATTGAGCAGCCCAGCCTCCAACCTCTTTCTGCAGCTGCTCAGAACAGCCTCCCTTCTTGAGCTAGGATGCATTCTCTTGCTTGTGTTCTGATGAATCAAGCAAAAAAAAAAAAGGGGGGGGGCAACCTTGCAAGCAGGCCTTAGTCTCCGGGGATTGGAGTCGTTCTAGAGTCAATGTGATGAGAATGAGAAAACTCGCCCACTTTAATACACATATTTACGATAAAGTCAGCTCTGTGCAAAGCAATCCCTTCGGAATCCGGTAGAAACCAGGCAGAAAAGTAGACATTTACAACTCACTCATTTGCATATGCATTGGACAAGTGGACTCAGAGCCTGCCCTTGGCATCTCCAAAGGAGAGGAACAGTTGGTGGTGGTGTCTCTCTCACATCCTTAATCCCAGCTTCAGGGAGGCAGAGAGAGATGGTTTCTGCGTTCTGGATGAGCCAAGGCAATGTAATGAGATCCTGTCTGAAAACAAAACAAAACAAAACAAACAAAACATAAGGGATGTATCCTTCCTGACTGGTTGTTGTGTAGATGACACTTGTATCAAGAACTACAAGGCAAGATTCATCAAGTATTTTAAGGATTTAAATACTAGAAGGCACCAGGAGATGAGGACAGAGCCAGGCCTTCAATGGCTAAGGCACGGCTTAGACTGACTGTGCCCTGTTCTTAGGGAACATCAACGTGCTCATGGCTCAGCTCACAAAGCCGGCTTTAAACGCTTGTGGGTGTTAATGTTCCTACCTATCAGACGATACCTCTCAATAACAGTGTAACCTCCAGCCTTTTATCTGCTTTAGTAATTGAGGGGATAGAAAGTGGAGCCCCCAAAGGGTAGGTGCGGTTACAGCATCCAACTGAAAGGCAGCACAGAGTTTAAGGGCTTTTTTTTTTCCCAAAAGGAACAGTCCTTTGGCTCATTTCTGATGTAACGTTATCTTGTCTACCTCGGTCCAATACAACGCCTTTGGACAAATAATAAAACGAGCAACGACCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987:ENSMUST00000023722:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.4),PF138941=zf-C2H2_4=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=10.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGGAGAAGACCAATGGG
R:
AGCCCCACACAAACTGTTTCC
Band lengths:
342-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types