RnoINT0168536 @ rn6
Intron Retention
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139899775-139902613:-
Coord C1 exon
chr7:139902500-139902613
Coord A exon
chr7:139901260-139902499
Coord C2 exon
chr7:139899775-139901259
Length
1240 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACATTCTTCCCTCCCCATAGGAG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GGTTTCCCATCCCCAAACTGGACATGCTTCCTCAGCTAGAAGGAGGAGAAGAACAGTGGGTCCCTGACCCCCAGGACGTAGAGGGGAGGGACATCCGGAAGGTCACGTATGCAG
Seq A exon
GTGAGGACCTAGAAATACGCACGAGGGCATCATCTTTACATGTCTCTAACCAAAACGTTGAGAGTTTTGGTTTTCCAAAAGCAAGGCTGGGTGCGGAAGGCATGGAAGTCAGGCTGTGTGGGTTTGGCCTGCAGCCTGCAGCCATGAGACCTTACTATCTAAGATGTTATGGTTGAATACGCTAACACCGGGAGCAGTAGACGAGGGCCCAGGCACATAACAGGCACTTGACGAGAGTTGACGCTGGCGTTCAGCATCCGAGCCATGGTAGAGATGTCTTCCAACTCTGTCCAAGGACGCTGACAGCTACCAGCAATGGCCGCAGCTCACGCCTTCGCTCTCGTTCCATGCAGAAGTGTGAAGATGGTACCTAGTAGTGATGCACAGTAGCAAACGTGAAAGTAAATAGTGTTGGTGACTAGAGAGCAGTGAGAGAGCATTTATCACTTACTGAGTGCTGACCAAGAACAGATATGATTACCTTAAGAAGAGGTTCAGTCGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAGAACCAAAAAAAAAAAAAAAAAGAAGAGGTTCAGTCCTACTACACACACACACACACACACACACAGAGACACACACACACACAGACACACACACAGACACACACCACACACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACACACATACACACACACACACACACACACACACACACACACAGACGATCCATTCCGTTTTGCAGAAGAAGACTTAAAAAGTTAAGATGTCTCTGATGAAAACTAGGCTTTTGAAAATCTCCGTAGCCACTGTGCTATCCTGCACTGTCGTTTGGCATCAAACAATGTTCCCTGGGACTTGGGTGCTGGGATCCTATCATGGGACTCTCCTTTTAAGAGCTACATTCTTCCCTCCCCATAG
Seq C2 exon
GAGACGGAGGTGAACCCAAGGGTGATACTCCTGAGCTAGAGACAGAACCTTCCAGAACATTATCCAGTATGTCTGAAGAAACTGTTCTCTGGAACCCAGGGCAGGGTCCAAGCTGGAGGTCCATGCCCAGCAGTTCCACAGGAACGCTCCCAAGACCACGGTTCCTTCAGGAGGACAGCGTCTCTCATCTCCTACGCAGCACAGACACGGACTCTCTCTTAAAACCACATACGTGCCCTCAGTGTGGGAAACAGTTTGTGTGGGGCTCCCACCTTGCCCGACACCAGCAAACACACACTGGAGAGAGGCCCTACAGCTGCCTCAAGTGTGAGAAAAGCTTTGGGCGAAGGCATCACCTGATCAGGCACCAGAAAACCCATCTGCACGACAAGCCAAGCAGGTGTCCTGAGTGTGGCAAGACTTTCCGATGCAGCTCCCACCTGGCCAGCCACCAGAGAGTGCACGCGGACAGCAAGTCCTGCAAGGGCCAAGAAATTGGAGAGAGTCCTGGGGCTCAGTGTGCCCCACCAGTGCCAAAGTGCCACGTGTGCACGGAATGTGGGAAGAGCTTTGGCCGAAGACACCACCTAGTGAGACACTGGCTAACCCATACTGGGGAGAAGCCCTTCCATTGCCCTCGCTGTGAGAAGAGCTTTGGCCGTAAGCACCACCTGGACAGGCACTTGCTGACCCACCAGGGACAGAGTCCTGGGAGCAGCTGGGACAGAGGGACATCTGCCTTTTGAAATCTGTCTCTTCTGTAGCTACGGTGATATCTATAAGCCGGTGCTACCAGCAGCCACTGCCAGAGCCGTCCCTCTCCTGTACCCAGAGAACGGGAGTATTTCTCACCTCTTCTGTGAGACAACGTGCAAAAACAGAGTTCTTTGGGCAAAATTTGGGGAAATGGTGCAAAGTCTGTTTGTGCCTATTCATCCTGAACCTACTCTCAAGGGTACAGCGGAACCAGCAGTGATGGTTGAGGTCTATGCGGTACCAATTTCTAAATATTTACTCTACAGAGAGAATAGGTGAAAGGGTCCGTTGTGAGTATATCAAGGGCTCTGAGATCCTCCGCAGATGGTTTCTGTTTGTGTAATGTTTCCTAAATTTGTTTGGCCCCAGGATCTATTTCATATCCCACAGAATGGGTGACTCCATGAAGTTTACTTCTGTGAGCACTGGGCTAAACTGCAAGGAGGAAACAGGAAAGAGATGGTGACCAGGCATTCAGAGCCTGAGAGCCAGGGGCCAGACATTCTCTGTGGGTCTGCCTCTCTTCCCCAGTGATTACACACCTCTCACTCCTACCTCTGCAAAGTATAGAGTGACTGTTCACTCGAAATTCGTATTCCCCTCATCCTGCACACACACACACACACACACACACACAAACACACACGTGCACACACATGCACACACATGCACATGCACACCACACACACACACACACACACACACACACACACACACACACACACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447:ENSRNOT00000045473:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.4),PF138941=zf-C2H2_4=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=10.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTAGAGGGGAGGGACATC
R:
CTCCAGTGTGTGTTTGCTGGT
Band lengths:
343-1583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]