HsaINT0187975 @ hg19
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:31834]
Coordinates
chr12:48733793-48738495:-
Coord C1 exon
chr12:48738382-48738495
Coord A exon
chr12:48737511-48738381
Coord C2 exon
chr12:48733793-48737510
Length
871 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTATTTCCCCTTCTCCGCAGGAG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GATTTCCAATTCCCAAACTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGGAGAGGGACATTCTGAGGGTCACATATACAG
Seq A exon
GTAAGAACCTAGAATAGGCTTTCAGCCACTTCCTTCACAGTTCGGGACATCATCATTCCATGTTCGTTTAATCCCTCCTCTGCCTCAGAGAGTTCCAGAGACAAAAGGTTTAGAGATTTTTTTCTTCAAAAGCAAGGGAGTGTAATAGAATGATGTAGCAGGCACTTTGTGGATTTGAATTCTGGGCTGTAGTTGTGGGACCTTGGAAAAGTAATAAAACTCCCTTTGGTTTCTTCATCTGTAAATTATTGTGAAAATTAAATATATGAATATATTAGAATATTAGAATAGAACAGTGCCAAGCACATAATAAGCACTCAATAAATGTTAGTTGTTGTTATTGTTGATATTGTTGTCAACCTCCCACCCATTTCAGGAATGCCTTGAGGACTGCCGACAGGTGTCATTCAGCCAGTGACAATTGCGGCACATTCTGTAATTCTCTCCATCTATGCTTAGATAGAAAGATGCTGATTAATAGTAATATACAGTAGTAAATAAATAATGGTAATAAATAATAACAATAACATATACAATTTACTAAGTACTTAAACTATGTGCAGGTTCTGTGCTATCTATCTTATAACTGCCGGAGAGAGAGGTATTATTCCAATTTTACAGAAGAAATGAAGGTTTAGGGAAGTTAAGTGGGAAAGCTGAGATTCCATCTTAGGTAATCTGCCTCCTAAGCCTAGGCTTTTAACCTCTATATCTATTGCACTGTCTTGTACGACATTAGACTATGTTCTCTCAGCCCTTCTGGGGTCAAGTCTGGGCCCTGGCAGGTATCAGACAACCTCATTTGTGACTTAGGCCTCAAGCACTCTCTTGTGACTCTTCTCTTGGGGTTGGTATTTCCCCTTCTCCGCAG
Seq C2 exon
GAGATGGAAGTGAACATGAGGGGGATACCCCTGAACTAGAAGCAGAACCTCCCAGAATGTTATCCAGCGTGTCTGAAGATACTGTTCTCTGGAACCCGGAGCATGATGAGAGCTGGGATTCCATGCCCAGCAGCTCCAGAGGAATGCTCCTGGGGCCCCCTTTTCTTCAGGAAGATAGTTTCTCAAACCTGCTGTGTAGCACAGAGATGGATTCCCTGTTAAGACCCCACACATGCCCCCAGTGTGGGAAACAGTTTGTATGGGGTTCCCACCTTGCCAGGCATCAACAAACACACACTGGGGAGAGACCCTACAGCTGCCTCAAGTGTGAGAAGACCTTTGGGCGAAGACATCACCTCATCAGGCACCAGAAAACCCACCTACATGACAAGACCAGCAGGTGCTCTGAGTGTGGTAAGAATTTCCGATGCAACTCCCATCTGGCCAGCCACCAGAGAGTGCATGCAGAAGGCAAATCCTGCAAAGGCCAAGAGGTTGGAGAGAGCCCTGGCACAAGGAAACGGCAGCGTGCCCCACCAGTGCCAAAGTGTCACGTGTGCACTGAATGTGGGAAGAGCTTTGGCCGAAGGCACCACCTTGTGAGACACTGGCTGACCCACACTGGGGAGAAGCCCTTCCAGTGCCCTCGCTGTGAGAAGAGCTTTGGCCGAAAACATCACCTGGACAGGCACCTGCTCACCCACCAGGGACAAAGTCCCCGGAACAGCTGGGACAGAGGAACATCTGTCTTTTGAAATCTGTTTCCACTACAGCTATGGTCAAGTCTATCAGCCGGTGCTACCAGGAGTCACTGCCAGGGCTGCCGTTCTCCTGAACCCCAGTGGCCAGAATCATAAGCCCTGACCCCATCCCTAGAAAGATGAGGTCCCAGCAATGGCCAGAGCATTTCTCACCAGTTCTGTGAGATAGCACATAAAAATAGAGTTCTTTGGGCAAAACTTTTGGGAAGCAATGCATCCTACATGGGCTGATATTCAGCCTGAGCTGTTCTCAAGAGGAGAGTGGTACTGGCAGTTTATGGCTGAAATCCATTCTGATTGGTTGGAGTCTATGCTATACCAGTTGTTAAACATTTTGAGTATCACTCTTGCATACTGTTACTATTATATTTTCTCTATATATAGACAGAAAGGCCATTTTAGAATATTAAAGGCTCTGAAAATTTCTGCAGTAGACCCAACTGAAGGTTCTATTAAGGCAGTGTTTCCTAAATGTATTTGACCTCAGTATCCTTTCTATTTACATCCCACAGAACTGGTGACTATGAAACACTCTGGTGAACACTGGGTTAGAGAGTAACAAGGAAACAAGAGATAGTGATCAGGCATCCAGAGCCCCCTTTTTTATCCATATGAAAGCCAGGGGGGCCAGACCTTGTTCATGTGTGGGTCTGTCTTCCTTATGCCAATCAGCAGTATATACATCACCTCTCACCCTCACCTGCTGAAAAAATAACCTTTTTACCCATTATTCCTACTCCCTTCATCCTGCACATACATATATCCAGCTGAGAGATCACACTACAAGGCTAAGAGATGATCTAATACCCCCAAATAGCCCTGGCCCACACAGAAAAACAGAAAAACAAAAAAAACTTTATCCCCTTGAACAGTCCCCTCTCTCCTCTTGACTGTCTTTATGTGTCTGTGTATTTGTGTGCAGGGTCTTTGAAGACAGCATGCTATGTGCAAACTGTACAAGCTAGGTTTTCTAGGGGCTGTGTTCTGGGGATGAGGGTAGTGGGGATTATATGGGGTTTTTTCTTTGTTTCAAGACAGGAAGCAGTCTGGTTAAGGGAGAACTAGTGGAAAGGGTTAAATGACAGGTTAAGTTGAGTACAAAGCTTTCCCAGTACTGCTGAGATTAAGACAATTGTGGATGTGTATGTCTAGGTTTGAATCTCTGGGCTGCAGATTGCTTTTGCCCTGGCAGAGAAAGAGGAGTCTTTGGGGAGGTGAGCTGTTTCTTGTTGATTTCAGGCAAGAGGCACATAGAAACTTTGTATTGAGTGGGGATTTTGTTTTAAGTGCTGGAAAATTAGGGCAGGAATTACGTGTTTGCAAGTTGTTGCCATCACTGGTTTGAATTTGACTGCCTCATCAAGGGGCAAGAGTTATTCTTGAAGATCTCATTCTCCCAGAAACAGAACTTTAGGGAAAATGGCTGTGGCTTAGCTTTTCAGCTGCTGCAGGGTAATAAGCTTTCTGGTTGGTTTTCCTTCCAATTCTGGAAAGGTGTCCACACTAAGACCCTTAACTCTAGGGCTTGCATAAGTATTCTAGCATCGTTAGCTAATGAGTTGGTCATTGTTTCTCTTTATCAATAATTGTGTTAATACCAATCTTATAATTTAAAAATTATCTTGTATGTAAGAGCAGTTCGGGGTTAGGGAGGAAGAGGAGCAAAGTGGGATATTTTCTCTTTAATGCTTAGATACTGTTTCTTCCCTAAGATGTGTTTCTCAACCACAATTGGTGGAATGAACCAGAGAGGCAAGAGGAAGTGAATTGCACCAATTTAGTTTAGCGACTGTGCCTTTTGCAGGAAAAACTGGGTGAATCACAGCTCCTCAGAGTCCTGGACTCAACTAGAATTGAAGATAGACTTATTTTGCTGACTGGGCTTCTTAGAGTTTATGTGACTTGAACAGCTTGGCCCCTGCCTCCCTTCTGCTACTGTGAGCAGCCTTCCTTCTTCCTTCATTCTTCCTGGAATGCAGTTCTCTTGCTTATGATCCTATGAATAAGGCAAAATGGCTGGTCTTTGTAAGGCAGGTCTTGCCCTAGCTTCTCAGAAACAGGAGCATTTTAGGATCAGTATTAGGAGATGCCCCAGGGAGTAAGAAAGTATTGGGTTCAGTGATAAATCTGGACTCTGACATTTCTTTTACTCTCCCTCTTTAATACTAAAAGCTCTGCATAAGCAATGGTTCAGAACCTGTCTTGGGTACAGACCTGTTGAATCTGACAGAAACCAGAAACGCACTTTTGAGAAAAAGACATTTGTAATTCACTCAGTTTTCCATACACATTTAGCAGGTTCAAAGCCCATCTGTGGAATCCCTAAACTGCCTTCAAAGAAAGGGAGTTCCCCGATCTAAAATGGTCATTATATATTTGTGTCAAGAATTAGAAGGCAAGGGTCACTAAATATTTTAAGGATTAAGGTACCAGAGGCATCAGTGGTATAAGGATGGAGTCTGGTCTTTAATTACGACAAGGGTATTGCTTACATTCTACTCTCTGGTTTTCAAAAAGATCTGACATGCTGACAAATCCAGCTCCTCACAAATCTTGTTTGAAGGACTTGTGGGAAGTGATATTCCTTACTATTAGATCACGCCCCTTATAACTACATGTTAACATCCAGCCTTTTATCTGTTTGAGTAATTGTAGGGATAGAAAGTGAAGCCCCCAGAGTTAGGTGCAAGTATAGCACCCAGCTGAAAGGCATCATGGAGTCTAAGGGCCTTCTACAGAAGGGGCAATCCTTTGGGTTATTTCTGGTGTACCACTGTCTTCTCTACCTCGGTCCAACACCACCTCTCTTGGACAAAAAATAAAACAAGCAACAGCCATCAGATGAGTGAATAGATTTGAATGATTTTTCCCACAGGGAATCAGCCTCAAATGTTCATGTTTCACCCCGTCCCCTTTAAATAAAAAGAATCTCTGTGTTCTCTTTGGGCAAAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528-ZNF641:NM_001172682:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=NA C2=0.396
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=10.3),PF138941=zf-C2H2_4=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=10.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCCAGGACTTAGAGG
R:
TTTGTTGATGCCTGGCAAGGT
Band lengths:
342-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)