DreINT0023586 @ danRer10
Intron Retention
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6198835-6202177:+
Coord C1 exon
chr14:6198835-6198976
Coord A exon
chr14:6198977-6202042
Coord C2 exon
chr14:6202043-6202177
Length
3066 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TGACATGTTTGTACCTGCAGGTG
3' ss Score
10.94
Exon sequences
Seq C1 exon
TATACTTAGGGAAATCGATGAAGTACATCAGAATATGGGCTACTGTCCTCAGTTTGATGCCATCAATGATCTGCTAACTGGACGGGAACACCTGGAATTTTATGCTATCCTGCGTGGTGTACCTGAGAACGAAGTTTGTGCG
Seq A exon
GTGAGTAGAGAATATATACTAACATGCATATTTATTCATTTAGCCTTTTAGGGTGATTTTCATTTGTCCTGGTCAGATCCTGAAGTTTAATTGTATCGGAGTAATACATCATTTTTTAAAAAGTAGAAAAAAGTGAACTGCAGACAGCAACTTATTGCTCGTATGGTCACGTTTATACATGCAGTAAGATGCTGTCTGCAGTTCACTTAGCGGCCACCAGTGTCGCTACTAATAAGTGTTTCCCAATGGAGAGTGGTCTGGATGCAGACCTGGTGCAGTGCAGTCTGTGCTGCATCCAATGCTCTTTAATATGCTCTTTTTTTATTATTTTTTTAATTTAACTCAATGCCACAAGAACGAGAGGTATTACATTTCACATATTTCTGAAAAAGAGAGAAAAATATATATATATTTAATATAAGTATATAAGTAAATATATATTATATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATTATATTTACATTAAATTAAATGTTTTTAGAGCATTACATGTTTTCAGTGCTTTTTTGTTTTGTGATTGTTCTAAAAGATTTACATATACTTTAAAGTCATTTACAAAATGGGCAAAATTTGGTTTACATTGAGCCCACTTTTTCTTATGTATATGGTGTTTTCCTAACAACATAAACAAATTAAAAATATATTGTCCTTTACAGTTCAAGTTCTCATTATCAGAATAAAACAGAACATCAAATAAACACATTTCTATCTTAAACTCCATTTTTTTGTTAATAAACTATTCTAAATCTTTCCAAAATATTCTTGAGTAAATACAATGAAAAAAAAAGATGCAAAATTGTTTCTTTTTCTTGACCACAAAATTCACATATTTATGAAATATTGAGTTTAAATCTTTCCAAAACATGTTTAGTTGGATAAATTCTATGGAGTGTTTTGTACGACACTTCTTTGATCTTGTTACTTAGGCAAAACTTATTTGTCAACTTCCAAGCTTTACTCCAAGAAATATTAGCAAATAATGAAAGTCAAAAATGTTTTGCTGTAGGTAGAGCCAACGAACGGAGAGCATTCTTTATAACCTTATTGTTACATTGTTGTTTTAATACATCAATATTTTCAATGAAAATGTTTTCACAATGATTACCTATGTAGGTCTCTTCTGAAATAGCTCTTTAATGGGCTCACCTCTAACCCTACCCGTCACAGTGATGTCACTAGCTCCATTTGAGTGCATTGTTTCTGACACTGCATTCCTGAGTAATGCAATCTCAGCTTGCATCATAAAGGCTGCATCCAGATACTATTGTCCCAATGGGCCATATGCACAGCTAGTGTTTTTCAGCCAACAATAAACTTCTGGTGAAAGGTTTATGTGACTATTTTCAATTCCGTAAGATTGCTTTTACAGCATGGATGTAGTAATGGAATAAAATCCAATCAGTTAAATAGACTTAAGCAAGTGGTGCATGACTGGAACTTGTAGTCCATATAAAGACGGATTTGTAGTTCTTTAGTGAGCTGCGTGTTTACTAGCGATCTGCCAGGACTAGATCGCTGGTGATTGTGACAGGTGAAGTATTTTTACTTGTGTGAAAATGCCTGAGACTGATGGTGCGAGAACTTAGTTACAAATGGCAACAGGGCCGGAGTGGGACTCTTTTTCAGCCCTGGAGTTTCAAGCCTCAGACCGGCCCACCTCAGTTCACGACTGACTATATTAAAATAAGGTCATTTCCAATTCAGTTTCTAATTACACTATCACAACTTTTTTTTTTGAGAAAACAGCTGCTTTAGAACTTTAAATGTTCAACAATCCTAACAGTATTACATGTCTTAACAATAAAAAAAATAAAAATAAATAAATAAATAATAATAATAACATACTCAGACGAGGATCAAACCCGGGTCGGCAGCATCGTAATCTAACGTGCTAATCACTGGACCACAACAGTTATATATTGAGAAGTGACTCATCTGAGTTATATCATCATTGAGTTATATCAGCCATATATCATCAGGCTGGCCATATATAAAAAGAGTAGAGCTGCGGTAAAATAACGAATAAGAAGACTGTGGTCAAGTAAATAAATAAATTAATTTAAACAGTGTGACTGCTGAGAGCAACAGATTGTGGAGCTAGGGACACCGGCCCTCGCGGCCAAAAAACGGACCGGCTCACCGGGAATTCTCCCGGTCCTCCCGATTAGCCAATCCGGGCCTGAATGGCAACCTTTTAGGAATTCTTACTATAAATTGAAATTCTAATAAGGCAGCTGACAACAATTTTACTCTTATAGTGTGGCATACTGCAATGTGACAAAGACCAAACCAAAAGATTTTCAATCAAAGTTTGAAATGTAAACACAGAAATCTTGCGAGACTCGAGAATAGACATGGCAGACGATAGGCAGGAAGGATTTGCTGATGCTCTGTTCTCTGTCCTGACTGCATTTGATACGCTGTTCACTTCTGTCAGCTTGCTTTATGATTGGAGATTTTTTTTTTTTTACGTGATAGTCTCCAGATTGTACATGTGTTTGTCTACGGTGACTTTCTCCTGAAATTCAAATGATATTGTGCTCCCAGCCCCTATTTTCAAAAGAGGGGGGAGCTACAAATGCCTACGTGTCTGCATAGTGACAGATTCAAAAACAAGATAAAAGTCCTATGCTAATGAGGAAGAGATTGTCACTAATGGGCGGGGTTTTCTCCCTCTGATGTCATGTACAAAGAAAGAATGTCAATCAAAGTATTTCTGCAGACTGTTTTTATGAAAGTATGATTATAAAAAATAAAATGTAGGCATTTATACCATTAGCAGCTGGTTATATTCACACACTGTAGCCACACAACTCTGTTTAAACCCCTTAAAAAGTGATTTTTGCATAATAGGTCCCCTTTAAATTGTGTATTAATTGTGATTTCAATGTTTCAAGTGGATAAAACAGGCAGCTAAGGAACAAATCAATTTGAGTTTAGATGGTTTAATTGACATGTTTGTACCTGCAG
Seq C2 exon
GTGGCGGAGTGGGGAATCCGTAAACTGGGCCTGGTGAAGTATGTGGACAAAAACGCTGGAAGCTACAGTGGAGGAAACATGCGCAAACTGTCCACCGCCATATCACTGATTGGAGCTCCACCAGTGGTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009:ENSDART00000051556:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]