DreINT0023646 @ danRer10
Intron Retention
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12538006-12540441:+
Coord C1 exon
chr3:12538006-12538193
Coord A exon
chr3:12538194-12540270
Coord C2 exon
chr3:12540271-12540441
Length
2077 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTTATTTTTCTTCTTCACAGTGG
3' ss Score
8.79
Exon sequences
Seq C1 exon
GTGCAGCAGAGAATCGGCTACTGCCCCCAGTTCGATGCGGTGCTGGATCACATGACAGGACGGGAAACCCTGAGCATGTACGCCAGACTGAGGGGCATCCCAGAGAAATATGTCACCGCCTGTGTGGAAAACGTCCTGCGTTCGCTGCTGCTCGAACCTCACGCTGACAAACTCGTCCGCAGCTACAG
Seq A exon
GTATGAACATCAAACCTGAAGCCTCATTCACACTACAAGCAACTCACATTGGCGTTTGGACAAGCGACCGAGTGCGGCGACTTCCATTAGTGCGAGCGACAGCGACTGTTGGCGAGTCTAGAATGTGACAAAGTTGAGAATCCTTCAAGTTTATCCAAATGAAGAACCGATTTCTTGAGCCGACAGCCAATAGGAGCAGCAGTAGAGCTCATGTGAGCTCACGCAAAGGCTGGTTGTATTCTCCATGCTGTAGACCTACACACTCCTGCGTTTGCAGCAGATCGCCACCCTGAGCCAAAGACAGCTACAAAGTTGCTTCTAGTGTGAATGAGGCATAAGCGAAAGAGCATGGGTCTGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGTCGATATAATAGATCAGTGGTTAGATATATAGAACCATTAGATTCGAAAGTTAGAGAAAGTTTAGACATGATTTACAGCTAAAAACAAATCCGTCCTGTGGCATGGTTTATTTTGGAGGATGGTTAATTAAACATGATGTAACTGATGGTTGTACGTACATGATGAACTACAATTACGGGTAGTTGATAGCGCATGTGCAATAGGAAGACTCTGAATATCATAAGTCATATTGTTTTGTAATGAAATATTGCTGGGGTGTTTCGGTTTGCATAGACAAGTGTTTGGTCTTGCTCAAACATCTATTTATTTTATAACTGCTTTAAGGGCTTAGTGGCCACATGTGTGGACAGCACATTTTAGCTCTTAAGTGGCTATTTAAAATACTTTTCCTCCAACTGTTTTGCAGCATATGAAATGTTCCAAAAACTATTTTCAACTGTGCAAAATGGGAAAAATTGTTTTTACTCTCTGATAGTCAGAACAAAAGCAAAAAAATTTTTTATGTATGCATAAAAAAAACAGTCAGGAAAAAGTGTTTCATGTAAATTCGGACCACAAGTGCACATATATGGACATCATCTTTCTCTAAAAGTACATCTCATCAAAAGATGATACTTAGGTTTTATTCTAATTAGATTCTAATAAGCCCAAATAGCAGAGAGAAATAAAAAATGCATGTAAAAAAAATGGGCCTTAAGAGGTTAAACCCCACTTCTTTCTTATTTTACTACCAATTGGACAATATTGTCACAGTGTAGATATTCGTTTTACTTTATAGCAGCTAAAGCAGTGAAAAAAGACCAAAAAAACAGGCATCCGGAGATGACAGCAAAGAAATTAGTCAAAGTCAACTTTATTGTCCATTCAGCCACATGTACAGGACATATAGAGAATCGAAATTGCGTTACTCTCAGACCCTAGGTGCCTAACATATAATATTAATATAAGAAGTAAAGTTTTAAGAAAAAGAAAATTTACAATATATACAGCTGTTCATTAAAATGTGGTCTGAAAATATACATAAAAAATAAACTATTGTAAACAGCAATGCAGCTATCGCTAACAAGCCTGGAGGAACAGCGAAACTCCCTCTCTTCAGACTTTAAAACTACCATTTCAACACTCGAAGCTGAAGCAAATTCAAACTACTGTGATGGAACACGTCTCAAATATTGCTTCACTCAAAACCTATGATGAGCACATGCCTTGGAAACTATGTGTGCTATGCTAACCCTGCTGAAAAATACAGCCTATATGGTTAGCTGGTTTTAGCTGGTTGACCAACCTGGTTTTCGAGAGGTTTAGGCCACTTTCAGGCTGGTTTCCAGCCATTTCCAGCCTGATCTTGGAAAAAAACATCTAAAACCAGCTTGACCATCCTGGTTTAAGCTGGACATAGCTGGTTTTGGCTGGGCTCCCAGTCAAAATTGGCTAGGCTGGTCAAGCTGGTTTTAGCTGGTCATCTCCCAGGCTGGAAATGGCTGGAAACCAGCCTGGAAATGGCCAAAACCCCTCTAAAACCAGCCTGGTCGACCAGCTAAAACCAGCCAACCAGCCTAGGCTGGTTTAAGCTGGATTTTTCAGCAGGGAACAGAGCATAATTGGCAAACTTTTTGCTAAAGTTCTGGATCTTGAGTCCCGTAGCAGGCAAAATTAAATATTTCTGCTTATTTTTCTTCTTCACAG
Seq C2 exon
TGGTGGCAATAAAAGAAAGTTGAGCGCAGGCATGGCTCTGATTGGTGGTCCGCCTGTGATCTTCCTGGATGAACCATCCACTGGCATGGACCCTGTGGCCAGACGGCTGTTGTGGGATGCAATCACGCGCACCAGAGAGTCTGGCAAAGCCATCATTATAACCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524:ENSDART00000165980:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(42.8=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]