DreINT0033710 @ danRer10
Intron Retention
Gene
ENSDARG00000074329 | arvcfa
Description
armadillo repeat gene deleted in velocardiofacial syndrome a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
Coordinates
chr10:502873-503725:+
Coord C1 exon
chr10:502873-502969
Coord A exon
chr10:502970-503219
Coord C2 exon
chr10:503220-503725
Length
250 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
3' ss Seq
GACATAGACTGTTTCCACAGGCT
3' ss Score
4.66
Exon sequences
Seq C1 exon
GGTGTGAATGATAAGAGGCACTTCATCAGGACCAGCAGGCCGGCGGTGGGCTTAGTGGAGCGGACCCCTCAGCCGCTGGACTCCTGGGTCTGAACTG
Seq A exon
GTAAACACTGCAGATTCACCATTTCACCCTTCATCAGCCATAGAGGAGAACAAACACCACCGTGGCTTCTGCTACAGTTCTCTGATCAATATTTGTGCAAGTTTAACAGGAAGTCTCTCTTTTTAGCTTCTCATTATATGAAAACGCTGCTTTATTTGCAAATGTTTTAAGGCATATTTCAGTTTTGCGCGTAGATGTAATTCTCATCTTTGCATGTAAACACAGCTACTGACATAGACTGTTTCCACAG
Seq C2 exon
GCTGCAGATCCACATTGACAGACGCGACCAGCCTTCAGCACAATCAAACCAGAGAAAATCAGCAGATCATCATGTGTTCATCATCCACACCAACAGAAGCTGGAGGAACGGCGTCGAGATCGTCTGGAAGTGGACTTTGACTCTTTGCTGCTTTTGGCAATCTTCACTGTTAAACTCAAGATTCATGATGTGAGCAGTCGTCTGGAGATCTGATAATCCGCCATATTATGATCTTGTGTTGTTTCTATGCTTTCCTTTCCTTTGTTTTCTTTGTTGACGAGTCTCTAAAGTGTATAGTAAGTGTTCCGGATGTTTCTGTGATTAACCTCATGGACCATTTCAGTTCTCTGTCTTATGTTTTATGCACAAAAGAAATGATATCATGATATATGATGAATATGAGTAGATCATGGGGCTAAAATTCACATTAAAAAATACTGTAGTAACTTACGGTAAACACTGCAGTGTTTTTGAAGCGTACAGTAGTACAGTACAATTAATCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074329:ENSDART00000145220:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCACTTCATCAGGACCA
R:
TCTCCAGACGACTGCTCACAT
Band lengths:
292-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]