DreINT0033726 @ danRer10
Intron Retention
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25675081-25678322:-
Coord C1 exon
chr5:25678235-25678322
Coord A exon
chr5:25675135-25678234
Coord C2 exon
chr5:25675081-25675134
Length
3100 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
GCCTGTAAAATGCTTTGCAGGCC
3' ss Score
6.29
Exon sequences
Seq C1 exon
CCGATAGCAGCTGGAACTCCCAAAGGATCCAAGAGCTGCAAGCCTGGCTACGACGACACCACACTTCCCTTGATGGAGAAGAGCCAAG
Seq A exon
GTTAGCGTAAGACCCCAAACAGAGACTTAACATACTAGGCCCTGATAGCTGCAAATCCGGGTGCTCAGGGGAGTGCTGGAGGTTCAGGTGCACCTAAGCGAACATGTCTTCTGAGCGCCACTACTTTCTGTGTTTTACCACATAGCAGAATGCTTGATCTTTCACCTCTGCGCCTCAGCTGGTGTGTGCAGCTGCCGCATCTCTTGTGCTTTAATCGGTCATTTGAGCGCTTCATATGATACAGAATGATTTATGAGGATCAGACAGCAGATTAATGGGCCTCGACATAGGAGCTCATTATTCATTCACTCTGAAGTAAAATGATGGTAAATTACTGCAGTGCTGCAATAAAGAGTACCATCCGTCCACCCGAGCACATCTCATTGAGAGAGGAGTTAGCATGACAGCTTTGGCATTTTTCTGATTTTATTACCGCTGTTAGCATGGATGCGCATGACATTGATACATTAGATCATATCCATTAGTCCCACACCATTCCCTGCTTGCCTTAATGTGAAAAAAAAACAGTGACCGCCCACCTATTCAACAGCTTTTGTTCCAAAGTAATGCTCTCGTTCATTTTTCTCCATAGCTGGAAAAAAAAATCAGGCATTAAAACTTTTTCAACTCTGAAATGAATTCCTCATCCATGAACCATTGCAAGTGATCAGCAACAGCAATCTGTTGACTTAAGATAACACAGAGCTTGACATTAAGCTTTGTAATTTTTTGTTCATGCAAGTCCATCAGTCATCTTATATGTAAAACCACAGTAAAAAAAAATATGTGTTATGTAATAAGTTTCTTGTACAAAGATTTTTGCATTAATGTTGTATATCAGCTCTTACATAAATGAGCAATACCACAGGAGTAGCAGTGCGATATGGCTGTATATGGGCACTGGTGGAAGGCGTGTGTTGGTGTGTAGGCCGAGTGCTTTAGTCCCCCACCAGTGATGATATACAGCCATATTGCACTGCTAAGGGAAATTGACAGAAAATGACAGAAATTGTTGCTAATTCACCAACATCACATTAGAACTAGCATTTATTTCTACCATAATATCTAACAAAACAAGTGATTTTGCTGACATTTTAAGATTATACTGCTAAACGGTATGAAATGTCATCCGTCTACAGAGATTTCCCAGTATTTCTCTGTTGCAATTGGGAGATCACAATAATTATCACCAAAAGCAGTGCAAACACTACCGTATTATTGTTGTGTTTGCGATAAGGAAAAAACATTAAACACATGTGGGCATTTCTTCTTTCTTTCTGTTTAATGAACTAGTTTGTAGAAATAAAAACAAGAGACTCAGAAACAGGTAGCCAACCAAAAAGTAACTCTGGGTTATACAAACAGTGGCCAACACAAAATACATTCCTAATATATAAGACACTCAACACACTAAAATTAAATTAAAAGAGAGATCTCGACTTAGATAGTCACTTACCAGTTTTATAAAGATTGGATCAGCTGTAGTTTAAAATTACGCTGGGTTTTTCCACCTCTAAGGGCTTATTATGAGATCTCTGGCACCATCTTGGTCTCTGGCGGTTTATCTCAGAAATTATAAATATTTAAAATAGGGGCTATCCTTATAAATATACTGCATATTTGCAATCTAAACAACTACATTCTCGACTAAAAAAGCTTCAAAATTACATTATGTTGTCCAACAGCAGCAATATTTGTTTATTGATCTGCTGTCACTCTATGTGGGCGGAGTAATACAGAAGGGTGAGGAGGATGTAGAAGTTCTGTTATTGCAGAATATTGCACGGCTATCAGCCAATCAGATTCAAGAACCAGACAGAACTTTTGTATAAATCAGCATATATGTGACATTTTCCCCTTAAATTAATTTCCAATTTTTTTATCATACTAAATATTTGTCCTCAGATCCATAAAAACTCTGTAATGTTACCTCACATTTGATTCTGATATTTAAAGTCTCTATTATAGGTGTTTTCGATTTAAAAATGTTAAAAAGTTGTATATATAAATATTTATAGCTAATCCCTTTCTAAATTTGAAGTTAACTTTCTTCAACTACCTCATAGTTCTTACCAAATGTATAAAAACATGTTTCATCAGTATGCATTTGAAGAATCATTAACTCATAGGTTATAAATATAAATTCAATTTACATTTTGCCACAGTTTCTTTATGTTTGCTGTTTGGCACATTTGATTTGTTTTCTCAAAAATAGGCAGCCTGTGTGAGCCTCAGCTGCCACTGCCTTGTTACTGACTGTCAAAATATTATAATTAATATAGTGACTAATTGTTATTTATATGCTTTTTGAAAGTGGATGGTCACTGTTCAGTTACTTTACTGCTGTTCTCACTTTGTGTCCTCTAATTGTCACTTTAGATGATTGATGGGTATTAAAGATTCACAACAGTGTTCGTCAACACAAATAATGCTGAAAAAATACTGCTATGCTAAAAAACGAAGCTTAAAAACTAAAAACAGTGCAAGTTTTTGTTAGTTTTTATGTTATTCACTACATTTTAGTCTTTTTTTATCGTTGTTATTATATGCTCATTTGTAGGAGAGGCTTGTGTATTCAACAAAAATTATGGTTTGTCTAACCCCATTACTTTGTTCATTATTTGGCCAAAACCAAAAAGTGTTACTTTGTGCCCCGCTCTCCCCTAGAACGTGCTTTTCCGTTGCACACTCAAAGGAAAAGAACATGGACATGTAAAGTCATCTTCAAGCTTAAAGTACAAATGGCAATATTATACTTGCAAAAATGTGTTCAGATGCGGTGGTAAGTGATTATGTACAAATAAGCCCTCAGTAAACGGAAGTCTTTATCAAACCACCTTTTTGTCACACATTCCTTAAACTTTACATTTTAAAAAAGTGAAGATTACGTCAAATTAGGTCCCCACCAATATCAAAAGCAAATCTACGCCCTTGCAACCGGTAAATCAGATTACATAAAAAAAAAAAAAAAGAATCAGGATCATGCAAAAGAAGAGAATCTAATTAAATACTATTATCGATGATCATTTCTATTTAATAATAATGAACATACAGTAAGTCTTAGTTCAGTGAAAAATGCAGCCTGTAAAATGCTTTGCAG
Seq C2 exon
GCCACCGAGGGTGTAGCGGTGGGGATATGATACCAATGGACGAACTCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688:ENSDART00000146070:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]