DreINT0034732 @ danRer10
Intron Retention
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7949200-7953562:-
Coord C1 exon
chr13:7953131-7953562
Coord A exon
chr13:7950104-7953130
Coord C2 exon
chr13:7949200-7950103
Length
3027 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTTTCTTTGATCATTCTAGGTG
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTGTGTGGAGGAAACAAACCATACATCGCCCCAGTTGACCTTCAGCGCTATCATGATGAGTTTAAGAAAACCTCAGTCGATCAGTTTCGCGGGGTGAAGAAAATGGGCGGTGTAGAGTTCTGTCATCGCTATCAGGAGCAGTTAGAGACAGAGCTCGATGAAGTGTACACAAATTTCGTGAAACACAATGAAAGCAAGAACATTTTCTATGCAGCAAGAACTCCGGCCACCCTGTTTGCAGTCATGTTTGTCACCTACATGGTCTCCACCGTAACTGGATTTATTGGCTTATCATTCATCGCTGCTCTGGCCAGTGTGGTGATGGGGGTAACTCTGCTGTCGCTGTGTGCCTGGTCATATGTCAGATACTCAGGAGAGTATCGAGAAGTGGGAGTGACTATAGACCTAATAGCAGAGGCCCTGTGGGTACAG
Seq A exon
GTGAGTTATAGCTCTTGGTTGTGTTTCCACATGTTGGTTGGGCCATCCCATGTTCTCTCCTTTTCCCCACACATTGTTGTTTCAGTTGTTTCCTGTCTTTTATGTCCATTTCTTTCCATAAACCAGTGGTTCCAATCCTTGCCCTGGATTTCCCTGGGGTTTTTATAAGTTAGCAAGGGTAACAACCCAAACTCAAATATGTGTAAAAACATTTGGGTGAATGATTAATGTCTGGCTCCAGGTTTCTGTGCCCGACGATCGGGTTGTCTTGGTCCTAACCTTCGACCACCACTTGTTCCACAGTGTACCGGCCCCTTATGACTCACCTCTGTAGGTGGAATCCAAGTATCTTTGTTCACGAGTGAGGGAAGGATGGAGCATGAGATTGACAAGTGGATCTGTGCAGCGGCAGCAGTAGTGTGGTCGATGTACCGGTCCGTTGTGGTAAAGAAGGAGCTGAGCTGAAAGGCAAAGCTCTCGATTTACCGGTCATTCTATGTTCCTAATGTCACCTATGGTCATGAGATTTGGGTCATTATTGAAAGGACAAAATTTCAGATACAAGCGGCTGAAATGAGTTTCCTTCGCAGGGTGGCAGTGCGCACCCTTATAGACAGGGTGAGCTCTGTCACCCGGGAGGAGCTCGGAGGAGAGCCGCTGTTCTCCCACATCGAGAGAAGTCAGCTAAGGTAGCTTGAGTATCTGTTTTGCATGCCTCCTGGATGCCTCTCTAGGGAGGTGTTTCAGCCATGTGCCACTGGGAGGAGTCCTCCGGGAAGACCCAGGACATGCCGAAGGGACTATGTCACTCGGCTTGCTTGGGAACACCTTGGGAGTGTGTATACACTCACTTTTTATTAGGTATTTTATTAGGCCATTTTACTAGCTACACCTGTCCAACTGTTTGTTTATGCAAATTTCTAACTAGCCAATCACATGGCTGCAACTCAATGCATTTAGGCATGTAGACATGGTCAAGACAATCTGCTGCAGTTCAGACTGAGCATCAGAATAGGGAAGAAATGCGATTTAAGTGACTTTGAACGCGGTATGGTTGTTGGTGCCAGACGGGCTGGTCAGAGAATTTCAGAAACTGCTGATCCACTGGGATTTTCTTGCACAACCATCTCTAGGGTTTACAGAGAATGGTCTGAAAAAGAGAAAATATTCAGCGAGCGGCAGATCTGAAGGCACAAAAGTCTTGTTGATGCCAGAAGTCAGAGGTGAATGGCCAGACCGGTTCAAGCTTATAGAAAGGCAACAGTAACTCAAATAACCACTTGTTATAATCGAGATATGCAGAAGAGCATCTCTGAACACACAACACGTCTAACATTGAGGCGGATGGGCTACAGCAGCAGAAGACCACACCGGTTGCGGTTGAGGCTACAGTTCAAATAGGCTCACTAAAATTGAGCAATAGAAGACTGGGGAAAAAGTTGCCTGGTCTGATGAGTCTCGATTTCTGCTGCGACATTTGGATGGTGGGGTCAGAATTTGGCGTCAACAACTTGAAAGCATGGATCTAACCTGCCTTGTATCAACGGTTCAGGCTGGTGGAGGTGGTGTAATGGTGTGGGGGATATTTTCTAGGCACACTTTAGGCTCATTACCAATTGAGCAACAAGTCAACAACACAGCCTACCTGAGTATTGTTGCTGACCATGTCCATCCCTTTATGACCACAGTGTACTCCTCTTCTGATGACTACTTCCAGCAGGATAACGCACCATGTCATAAAGCGGGAATCATCTCATACTGGTTGCTTGAACATGACAATGAGTTCACTGTACTCAAATGGCCTCCACAGTCACCAGATCTCAATCCAATAAAGGATCTTTGGGATGCCTTGGAATGGGAGATTTGCATCATGGATGTGCATCTGAAAAATCTGCAGCAATTGCATGATGCTATCATATCAATATAGACCAAAATCTGTGAGGAATATCCAGTACCTTGTTGAATCTAAGCCACGAAGGATTAAGGCAGTTCTGAAGGCAAAAGCGGGTACAACCCAGTACTAGTAAGGTACATAATAAAGTGCATATGTGTGTGTCTGTGTGTATATGTATATATTTATCAAGTTCAAGTTGTACCAATGTAGTTGCTATCAACAAAAATTTTCATGACACCATTATAATGGCCTCGTGACAGTCATGTTTATGACAGATATTTGATAAGTAATATTGTCTTGGTAATGTCAAGCTGTCATGACAAATACAGGTTGTGATTGTATTTGTTTATGTACAGTTGTCATAGGAAATACACCTCATACAATGTCATGTTTGAGTTATAAAAATAACAAAATTGAGCTAATGGCACTTCATGATGGTTGTCATAAACATTTATTGTCATGTCACAATTATAAATGTTTCTTAAAAGTCTTACGGACAACATGTTCAGGTAAAGTATTACCCTGAAAGGCTTTAATTCATTTAAAGGATGAATTTATGATGGGTCTTATGCAACACAATCTCACGGCAATTCGTAACTTTTTCATTTAGTGGCTAATTCGTACGATCTAATTCGTACATTTTAGTAAGATTTGCTCATCCCCCAATGACGGTTGGGTTTAGGGGTGGGGTTAGGTGCCACGCCTCCTTTTTAAAATCGTACAATTTCTTACGTCTGAACTCGTACGAATTTGTACGAATTAGCCACTAAACTGCCAAAATGTAAAATACTTACGTTTTCTCGTGAGATCAGGCTGGTCTTATGGGTTTGGAATGACAGTGTTTAAGCAAAATCCTAACTTTTGAGTTCTCCTGTTTGCTGAAAACTTAGAAATTATGTCATGGACTGTTTGTTTGTTTATTATAAAATCCACTGCACTTTAACAGGTGTAACAAGGGCCAAGGGGAGTATTTAAAAGACTTTTTTATATTTTTAACCTGTTAACATCCACCCAAAATGTCTAACAACCCCTTGAAAACAGATTAAAATGGTTCAGAAAAAAAGCGTCATTCAAATTTGAAGCGTTTATTCATTCATAAATAATGAACTATTTGTTTTCTTTGATCATTCTAG
Seq C2 exon
GTGCTGAAGCCACTTACTGAGCAATACATGGAAGAAAATGTCCGACAGACTGTTGTGAACTCGATAAGAGCCTCGCTAACAGATCAGGTGACACAAGCTACAAAGTTGAAGACCAACTGACAGTTTGCTCTGCCTTATCTGCCCAGTGTTTGAACAATCACTGCTTTTATATTGTGTAGTTTTTGTGATGTTTGGTCATGTAGACTCTAACCAAAGTTTACAGCGTTATTTACCCTGACCAATAAACACACCAACAAACAGACTTGCATTATAATCTCAACGGACATCATTACAAATGCTTCTAAATTCAGGTTTAAGTGATCAGGTATATGTGCAGCTTTGAATTTCCCTTGGCTAGAGGGATTATTCAGGACAGCACCGCAAATGTTTTACAATCTGTAAGTTAATTGGGACACTGTATTTCCTTTTGTTGAACAGTTGAATTCCAGTTCTCTGTGGATAATTTGGTTATCATTTTCCATTTAGACTTCTACCGCATAGTTACTTGGTGTAAAAACCTAATAGCCTATTTGCTGGATTTCTTGTGAGGTATTTTTAGAGCCTTTAAGGAATGCTGAAGTTGTAAATCCATCCAAGACACCCCTCTGCTGGGCCTCTTTCTGTACAGTGTTGTTGTAGACTGTATAATAGCCTCATGCATGTAAATGAGTGTACAAATATCAGCTGTAGATCGTACGAGGATTTCATTTACAGACAATGTTTGGAGATGATTATGAATGTGTCTCCCCAGTTGCCTTTTGTTGTGCTTCTCCAAGTTCAGAGCACCTTCCACTGAGCAGTTTTCTGACGCAGGAAGAGTGCTCATGAGATGACTTGATTGTCAATCTTTTAAAGGTTATGCCATTTAATTTATTTTTTAAACAATTAAAATATGTCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719:ENSDART00000080460:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(57.2=54.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]