BtaINT0022825 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20691386-20694060:-
Coord C1 exon
chr11:20693629-20694060
Coord A exon
chr11:20691506-20693628
Coord C2 exon
chr11:20691386-20691505
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GCACATTTCTCATACCACAGGTA
3' ss Score
6.38
Exon sequences
Seq C1 exon
GTATGCGGTGGGGACAAGCCTTACATTGCACCTTCAGATCTGGAGCGAAAACACCTGGATCTTAAGGAAGTGGCGATTAAACAGTTTCGTTCAGTGAAAAAAATGGGTGGAGATGAATTCTGCCGTCGTTATCAGGACCAGCTTGAGGCTGAAATTGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGTACCCCTGCCACACTGTTTGCGGTCATGTTTGCTATGTATATAATCTCAGGACTGACTGGCTTCGTTGGCCTAAACTCTATAGCCGTCTTGTGTAACCTTGTCATGGGGTTAGCACTGACGTCTCTTTGTACTTGGGCATATGTTAAATACTCTGGGGAGTTCAGAGAAATTGGAACAATGATCGATCAGATTGCTGAAACACTATGGGAACAG
Seq A exon
GTTGGTATCTCTCTTTTGGTTTTTCAGTGACTAATCTTATCCTTGTGGCTCCCCACCCCTCCTCCAGTCCCCCATTCCCCACCCTCACCCCCAATATTTCCACACCTACTTTTTCTTTATATGGAGAATGGCAAAAGGATATTTTCTGTTTTGTTTAGATGCATAATCCAAATATAAAGTATAAACTGAAGTTTTTTTTCCTTGAAAGTTTTAGTGTGCTTTGGTTAACTTATATCTGTAATACTCTGGATAGTTTCTTAGTTATAGGCCTGATTATACCAGACAAGTGGGCAGGACCAGAGTCTTTAAGGATTTTCCCCTTTTTTTTTGTTTTTTTGAGAAAAGAAAATATCAGTGCAAGAGTAATGAAGGTAAGGAAGTAAGTTCGGAAGTGCAGTTCCCTTGAAGTTTCTTACTAGGGTTGATAAGAAGCAATGCATGCTTATATTCCAGGAAAAATGGGTGATATTCAGGTCTTCATTGCCTTCCATGAAGATAGTAGTGGTTTACTGATGTACTTACTACAAAGAACAATCTTATAGGGAATTCTTACAGCAAATAATCTTTTACTTCTGTACTATGGAAATGCTAATGAGCAAAGCAAAGTACCACAGGGAGCCAGCTTTTCTTAATCATAATCTGTTGCCGCAACCAGAATTCAAATCATGATTTTTTACCTTAAACCAGAATTCAAAGTTGGGCCTGACAAGTATCTACTAAGGAAAGCCTTGTGTATCAGCCAACTGTTGTCTGGAATTGCCTGTGTTCAGAAAATTCCACTTAAGGATATTGTCATTAAAATGGTCATCGTGAAATACCTGAGCATCATATCAAGAATGAAAGCTACAGTTATTACTGATGGACAATATGAAAGGCGTTTTCAGATACCATTTCTGGGCCGATGAAGTATTGGGCTTATTTTGAAGATTTAAGATAATGCAGGTCCATGCTGGTTTTGGTTTTAAAGTCAAAGACTGAAGAAGTTGATTGATGCTGATTTTTCTACTAATAATGTTGTTACTATTTTATACAGTGACCTGCTATATTAATTTCCATTTTATATTTCTTTAGAGAAATGCTCTATTCAGATCTGATTTGGAACCTTATGTCTGGATATTTATTAAATTTTTATATCTTTAAAAAGTTCATTCTTTATATTCCTCTGATATGTTCTGACAGAAGATGGATTAAAAGCTATCACAACCTAAAAAAAAAAAGCTATCACAGCATCACTTAAAATAGTATCTACTTTAAAAGTGTTGAATCATTATTAATTTTCTGCCACATGGAATTTTGATAATTGTACAGAGTCTTCTGAAAATCAGTCATCTCCAGTACAGCGCTGATTCTAGGATTTTAGAGGTGCCACTATCACAAAACAAGTCAGTGGAAGAATCTAAAGCGTGTACAAGTATTTTTAGTACAGTTGAGGTAAGATGATCACTAGGCGGAAGGTCTGTGCAGTGTCAACAAACCTTGTCTAAATTTTTTTGCATTTCTCTTTTCTTTTGCTTCAGAGGAGTCCCAGGAAGGTGAGAAACTATGAAGTCTCAAATTTTTATAGTCTTAATTAAACTCTTTAAGTTCAAGGCCCTCTGAATCATTCTTCTAACGAATCACTCCATGTTTTAGGTGTTTTCCAAACTGTTCGAAGTTACTAGACGTCGAATGGTTCATCGTGTTCTTTCGTCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTTCCCTATCTGAAGTGTTCACACTTATACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAAATGCTGTATACATACCAGATTTGATGCTGCATATAGGGTATGGAATTGCACATCCATCTCATAGGAATTGTAATGGTTTGAATAGGAGGAAAGTAATTTTTGTTACATTATAAAATGTCTAACTGCATTATTTGTAGCATCATAACTTTTTTTTTGGGAGAAGCATCTTTTTATTTCCCACATTCCTGGTTATTTTCTTCATTGCTTTGAATTGAATTTTTTATATCTATTTTTATATGTAACTCTTTTTTTACCTCATGTTTTTATTTGTTTTGCACATTTCTCATACCACAG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCAGATTAAAGACAGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167:ENSBTAT00000061283:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development