BtaEX0004789 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20691261-20694060:-
Coord C1 exon
chr11:20693629-20694060
Coord A exon
chr11:20692097-20692111
Coord C2 exon
chr11:20691261-20691996
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCTTTTGCTTCAGAGG
3' ss Score
9.66
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTATGCGGTGGGGACAAGCCTTACATTGCACCTTCAGATCTGGAGCGAAAACACCTGGATCTTAAGGAAGTGGCGATTAAACAGTTTCGTTCAGTGAAAAAAATGGGTGGAGATGAATTCTGCCGTCGTTATCAGGACCAGCTTGAGGCTGAAATTGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGTACCCCTGCCACACTGTTTGCGGTCATGTTTGCTATGTATATAATCTCAGGACTGACTGGCTTCGTTGGCCTAAACTCTATAGCCGTCTTGTGTAACCTTGTCATGGGGTTAGCACTGACGTCTCTTTGTACTTGGGCATATGTTAAATACTCTGGGGAGTTCAGAGAAATTGGAACAATGATCGATCAGATTGCTGAAACACTATGGGAACAG
Seq A exon
AGGAGTCCCAGGAAG
Seq C2 exon
GTGTTTTCCAAACTGTTCGAAGTTACTAGACGTCGAATGGTTCATCGTGTTCTTTCGTCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTTCCCTATCTGAAGTGTTCACACTTATACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAAATGCTGTATACATACCAGATTTGATGCTGCATATAGGGTATGGAATTGCACATCCATCTCATAGGAATTGTAATGGTTTGAATAGGAGGAAAGTAATTTTTGTTACATTATAAAATGTCTAACTGCATTATTTGTAGCATCATAACTTTTTTTTTGGGAGAAGCATCTTTTTATTTCCCACATTCCTGGTTATTTTCTTCATTGCTTTGAATTGAATTTTTTATATCTATTTTTATATGTAACTCTTTTTTTACCTCATGTTTTTATTTGTTTTGCACATTTCTCATACCACAGGTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCAGATTAAAGACAGACTGACACTTCATCTCCTCATGGACTCCACTCTCCCTTTTTTTCATGCTTGCTGTACAATGAGAACTCAAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTATAACTGGCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000061283fB846
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGTTCAGAGAAATTGGA
R:
ACACGATGAACCATTCGACGT
Band lengths:
111-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development