GgaEX0012443 @ galGal3
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
NA
Coordinates
chr3:17383373-17385882:-
Coord C1 exon
chr3:17385652-17385882
Coord A exon
chr3:17384242-17384256
Coord C2 exon
chr3:17383373-17384147
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCTCCATGCTTCAGAGG
3' ss Score
7.32
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATATTTTACGCTGCTCGTACCCCTGCCACTCTATTTGCAGTCATGTTTGCCATGTATATAATCTCAGGACTGACTGGGTTCCTTGGTATGAACTCCATAGCTACCCTGTGTAATCTCGTGCTGGGGATGGCTCTTATATCCTTTTGTACTTGGGCATACGTTAAGTACTCTGGGGAATTCAGAGAAGTTGGAACAGCCATCGATCAGATCGCTGAAGCTATATGGGAACAG
Seq A exon
AGGAATCCCAGGAAG
Seq C2 exon
GTGTTTTTCAAACTCTTTGAAGTCCTTAGATGCCGAACAATTCGCCGTGCTCTTACATCAGTGCCACGACAGCGACTCTCATCCAACAATAACAAGAAGAAAAACTAGCCAGTATTTTTAACTTTCTTTCTGTATCTGAAGTGTTCACAACTTACACATATAGGACAATAAGCTGGACTGTCTGGGCCGGTCTGCATAAATGCTGTAACCATACCAGACTGATGCTGCATATAGGGTATGGAATTGCACATCCACCTTCTAGGAACTGTAAAGTGGCTTGAAATCAGAGAAATACTGCTGTGTAGGAGGGATATCACTTGTGTTCATAGCATGTGACTGATTTAACCTCATCAGTGTAGCAGCAAAACTCATCTATTTCAGTTCATGCCAGTTTGTGTCAGACTTCAGCATTCCAGATTTTTCCATTATTTCAAGTCTCATCTTTTTGTATGTTTTTTATATTTTATTTTCTTTGGTTACCTCATTTTTTTGTTTCTTTGCACGTTTCTCATTCCACAGGTGTTGAAGCCCATGAGTGATAATTTGGTGGAGGATCATATGAGGCAGTCTGTTAGAAACTCTATCAAAGCAGGCCTGACCGAGCAGGTGTCTCACCATGCCAGACTAAAGACAGACTGACAGTACATCTCCTCTTCAACTCTGCCCTCTCATCCTAGACATGCTTGCTGTACCATGAGAACTCAATAAAAAGAAAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTGACTGGCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(6.8=11.7)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGCCATCGATCAGATCG
R:
GCTGTCGTGGCACTGATGTAA
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]