GgaEX0012443 @ galGal4
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15772090-15774794:-
Coord C1 exon
chr3:15774363-15774794
Coord A exon
chr3:15772958-15772972
Coord C2 exon
chr3:15772090-15772863
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCTCCATGCTTCAGAGG
3' ss Score
7.32
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGTGGAGGAGATAAGCCTTATATTGCCCCATCGGACCTTGAGCGAAAGCACCAGGATTTCAAAGAGTCAGCTGTCAAGCAGTTCTGCTCTGTGAAGAAGATGGGAGGGGAGGAGTTCTGTCGGCGCTACCAGGAACAGCTTGAGGCAGAAATCGACGAGATCTATGCAAACTTTGTGAAGCACAATGATGGCAAAAACATATTTTACGCTGCTCGTACCCCTGCCACTCTATTTGCAGTCATGTTTGCCATGTATATAATCTCAGGACTGACTGGGTTCCTTGGTATGAACTCCATAGCTACCCTGTGTAATCTCGTGCTGGGGATGGCTCTTATATCCTTTTGTACTTGGGCATACGTTAAGTACTCTGGGGAATTCAGAGAAGTTGGAACAGCCATCGATCAGATCGCTGAAGCTATATGGGAACAG
Seq A exon
AGGAATCCCAGGAAG
Seq C2 exon
GTGTTTTTCAAACTCTTTGAAGTCCTTAGATGCCGAACAATTCGCCGTGCTCTTACATCAGTGCCACGACAGCGACTCTCATCCAACAATAACAAGAAGAAAAACTAGCCAGTATTTTTAACTTTCTTTCTGTATCTGAAGTGTTCACAACTTACACATATAGGACAATAAGCTGGACTGTCTGGGCCGGTCTGCATAAATGCTGTAACCATACCAGACTGATGCTGCATATAGGGTATGGAATTGCACATCCACCTTCTAGGAACTGTAAAGTGGCTTGAAATCAGAGAAATACTGCTGTGTAGGAGGGATATCACTTGTGTTCATAGCATGTGACTGATTTAACCTCATCAGTGTAGCAGCAAAACTCATCTATTTCAGTTCATGCCAGTTTGTGTCAGACTTCAGCATTCCAGATTTTTCCATTATTTCAAGTCTCATCTTTTTGTATGTTTTTTATATTTTATTTTCTTTGGTTACCTCATTTTTTTGTTTCTTTGCACGTTTCTCATTCCACAGGTGTTGAAGCCCATGAGTGATAATTTGGTGGAGGATCATATGAGGCAGTCTGTTAGAAACTCTATCAAAGCAGGCCTGACCGAGCAGGTGTCTCACCATGCCAGACTAAAGACAGACTGACAGTACATCTCCTCTTCAACTCTGCCCTCTCATCCTAGACATGCTTGCTGTACCATGAGAACTCAATAAAAGAAAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTGACTGGCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(54.3=48.6)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000013868fB1401
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGCCATCGATCAGATCG
R:
GCTGTCGTGGCACTGATGTAA
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]