RnoEX0012777 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2606591-2609370:+
Coord C1 exon
chr6:2606591-2607022
Coord A exon
chr6:2608602-2608616
Coord C2 exon
chr6:2608714-2609370
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCCTTTGCTTCAGAGG
3' ss Score
9.67
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTATGTGGTGGCGACAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGTGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTCATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGCACCCCCGCCACACTGTTCGCAGTCATGTTTGCTATGTACATAATCTCAGGACTGACCGGCTTCATCGGCCTGAACTCTATAGCTGTCTTATGCAACCTTGTCATGGGGCTGGCACTGACCTCCCTGTGTACGTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATTGGAACAATGATTGATCAGGTTGCTGAAACACTATGGGAACAG
Seq A exon
AGGAGTCCCAGGAAG
Seq C2 exon
GTGTTTTCCAAACTGTTTGAAGTCACTAGACGTCGAATGGTTCATCATGCTCTTTCATCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTCTCTATCTGAAGTGTTCACACTTATACACATAGGACAATAAGCAGGACCGTGTGGGCCGGTCTGCATAATGCTGTGTACATACCAGATTTGATGCTGCACATAGGGTATGGATTGCACATCCGTCTCATAGGATTTGTGAGTGGTTTGAATAAGAGGAAAGTAATTTTTGTTGCATTATAAAATGTCTTAATTGCATTGTTTGTAACATCATAACTTTTTCTTTCTTTTTCTTTTTCTTTTTTATTTTTGGGAGAAGCATCTTTTTATTTCTCACATTCCTGATTATTTTTGTCATTGATTTAAATTGAAATTTTTATATCTGTTTTTATATGTACTCTTTTTTTACCTCATGTTTTTGTTTGTTTTGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523-'21-18,'21-17,22-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000008988fB1663
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGCTGAAACACTATGGGA
R:
GTCTCTGTCGCTGTGCTGATG
Band lengths:
103-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]