RnoINT0022646 @ rn6
Intron Retention
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2606591-2610437:+
Coord C1 exon
chr6:2606591-2607022
Coord A exon
chr6:2607023-2609227
Coord C2 exon
chr6:2609228-2610437
Length
2205 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GCACATTTCTCATACCACAGGTA
3' ss Score
6.38
Exon sequences
Seq C1 exon
GTATGTGGTGGCGACAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGTGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTCATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGCACCCCCGCCACACTGTTCGCAGTCATGTTTGCTATGTACATAATCTCAGGACTGACCGGCTTCATCGGCCTGAACTCTATAGCTGTCTTATGCAACCTTGTCATGGGGCTGGCACTGACCTCCCTGTGTACGTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATTGGAACAATGATTGATCAGGTTGCTGAAACACTATGGGAACAG
Seq A exon
GTTGGTATCTCCTTTGATATTGCAGTGACCTATCTGACTCTGTGTGATTTCCACTTTCCACTTTCTATCTTATTTGTACACTTGCTTTTCCCGTTTTCATAGGAGGATGGGGGTTGGGTGGGCTGTGTGTGTGTGTGTGTGGTGGGTAATGTAGAATCTAATTTAGTTAAAGGCTTGCTTCCCTTTGTTTATAACTACAGTTTACTTTGATTAGCTTTCGTCTGTAATCTCTTTGGTTGATTCTTATAAGCTTAGGCCGGACAGTGGGCAGGGCTAGGTTTACTAATAATTCTTTTCTTTGAGCAAAGATTGTCAACGAGCGTTTAAAGGTAAGGAGAAAAGTTTTGAGCACAGGCAGTGCTTTTTTCTCTAACCAATATTAACAAACAATGTAGGAGAAATATGTTAGGTCTTCTTGTCTTCTGTGAGGAGGGTGGCAATTTATTGCAGTACTCTAAGAGATTTCTTCCCAAAGAAAGTTTGACATCTGTCCCATGAAAACACAGAGAGTAGAGCAGACCAGAGCAGAGCAGAGCAGCACAGACAGAGGAAGCAGCATCGACTGTAGTCACACGTCAGCCTGAGGCCCTGCCTCAGCTCTTATCCATCACGGGAAACTGTTTCTTACACTCCACCTGGATTGTTTGCGTATAGACGTTTCTCAGTGATCCTTAAGTGCCCAGACATCATCTCATCACACGCAGGGACAGGATGGAAGTGGTAATTACTAAGATGGGCAGGGGTAAACGCCTGGTCTGTGTCACTTGTAGGTCAGTGAGGCGAGGCCTTATTAGAGGTTCAGGTGTGCAGATGTTTGCTTTGGTTTTCAGTTCAAAGACTGAAGGAGGCAGTGATGTTTTTCTGAAGGAAATTGATTAGGTATTATATACCATCATATGACTGTATAAACCAGTGGTTCTCAGCCCCCTAATACTTTAGCACTTTAATATAGTTCCTCATGTTGTGGTGACCCCCAGCCATACAATTTTTGTTGCTCCTTCATAACTGTAATTTCGTTACTATTAGGAATTGTAATGGAAATATTTGGGGTGGGTGGAAGGTTGCCAAAGGGGCTGTGAGTCACAGGTGGAGAACATTGGAATAAACTAAGCCACTGTATTACCTCGGACCGTGTCTTTTAAAAGACCTCTGGTGTTTAACATCTCCTTTGGAGTTTGTGTTTGGACATTTTGTCAAGGTCAAAGTTTTGTCTCTTAAAACCAGTCTTACTGCCTTGCTCTCCTTTGATATTTTCTAATAGAAGATTAAAGAATCATTATCACATCACTGCTTTAAAAATAATATGCTTTAAACTTTTGAATCAATACTATTTTCCCACCTTGATTTTAATAATTACAGTGTCTTTTGCAATGCTTTCTGTCAGTGTTGATTGTGGGACTTTAGGGGTGCCATTATTGTAGAGGAGCTTCATGGGAGCAGCTCGGCTGTGTGAAGTTATTTTGCGTGTAGTATAGGGAGATGAGAGCCACCAATCACGGCCCCTTGTCAGGGAAGACTTGTGCTGTGTGCAGCAGGCCTTGTCTAAAATTCTTTGCATTTCTCTTTTCCTTTGCTTCAGAGGAGTCCCAGGAAGGTGAGAAACTACAAAGTCTGAAATGCTTCTAGTCTTTAACTCTAGCTTCGAGGCATCTGAGTCACTTTCCTAACACATCACTCACTCCGTGTTTTAGGTGTTTTCCAAACTGTTTGAAGTCACTAGACGTCGAATGGTTCATCATGCTCTTTCATCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTCTCTATCTGAAGTGTTCACACTTATACACATAGGACAATAAGCAGGACCGTGTGGGCCGGTCTGCATAATGCTGTGTACATACCAGATTTGATGCTGCACATAGGGTATGGATTGCACATCCGTCTCATAGGATTTGTGAGTGGTTTGAATAAGAGGAAAGTAATTTTTGTTGCATTATAAAATGTCTTAATTGCATTGTTTGTAACATCATAACTTTTTCTTTCTTTTTCTTTTTCTTTTTTATTTTTGGGAGAAGCATCTTTTTATTTCTCACATTCCTGATTATTTTTGTCATTGATTTAAATTGAAATTTTTATATCTGTTTTTATATGTACTCTTTTTTTACCTCATGTTTTTGTTTGTTTTGCACATTTCTCATACCACAG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCCGATTAAAGACAGACTGACAGCTCATCTCCTCACGGACTCCCTTGTTCATGCTTGCTGTACAATGAGAACTCAGATAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGCTTAGTGTAACTGGCCTCACAGATGGCTGCCACAGAGTGTGAACATTGTTTGTTGGTTTTCAGCCTTCTTTTGATGTCTCCTCAGACCGGCGATTGGCTGAGGAGCGTTAGTTTATCATGCACATTTGTGCCATGTTTAATTCTTTTCTTTCTTTTTACTGAATTTAATGTTAGTGAAATTTGTCTTATGTAAAAGGATATTTCAGGGAAATATTTTAAGAAATCTATTTAGAGTCTCTTTAATATAGTGTCCCATTGAAATTTTAATTTTTAGAGAATTTATGAATCACTGTATCAAGAATCAGATCGGAATGACAATGAAGCCTTTATTGAGCCACTACATTAAAAGTGTATATTGCTTTACTGCCTTCAATGCCAGTATTACATAAATGCATGTATCAGAAACTTCACAGAAATCACATGACAACTCGTAGCTGAGAAGGTAATTCTGAGGTGTACATTGTCTTGCCTTTTTAAATTTGTAAACCTGCCCTGAACGGAGATGCATTATCTGGGAAACTGAGCTGTCTTTGCAGTTTAGCCTTTCATGTACATAAAATACGCCATTAATTTTATTGGGGGAGAAATTCCATCCAAAAATGTTGCCTACAGCTGTGAGTTAAGAGTGTCTGTACAGTGTGTAGCTTTTATTTTCTAAAAATTACAGGTAGGGCATGTATATGAATTATAAATATATAAATACAATTTTGTATTAAAAGTTTTGTAGTTTATGGCAAAATCTGGTTCTGTGGTAGGCTAATAAGTACAGTCCTGTGAAAGGAATGTCTGTGGCTCATGTCAGTGTGTGAATGCATAGACAGTTTGAAGTTTTGATATATTTGTGATATTTATCTTCCTTGAGCACTGCAATCTCACCCCCAAGAGAATTCAATGGGAATGTTTTATTGTGACTTGTCCTCTGTTGCATTTTAAAGTTATTTCCTGTAATTTATTTTCAGTACATAATTAAAAATTTGTTGTATATATAAAATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523:ENSRNOT00000008988:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]