GgaINT0082229 @ galGal3
Intron Retention
Gene
ENSGALG00000008515 | ATL2
Description
NA
Coordinates
chr3:17383083-17385882:-
Coord C1 exon
chr3:17385652-17385882
Coord A exon
chr3:17383629-17385651
Coord C2 exon
chr3:17383083-17383628
Length
2023 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GCACGTTTCTCATTCCACAGGTG
3' ss Score
10.05
Exon sequences
Seq C1 exon
ATATTTTACGCTGCTCGTACCCCTGCCACTCTATTTGCAGTCATGTTTGCCATGTATATAATCTCAGGACTGACTGGGTTCCTTGGTATGAACTCCATAGCTACCCTGTGTAATCTCGTGCTGGGGATGGCTCTTATATCCTTTTGTACTTGGGCATACGTTAAGTACTCTGGGGAATTCAGAGAAGTTGGAACAGCCATCGATCAGATCGCTGAAGCTATATGGGAACAG
Seq A exon
GTTGGTATCTATTTTCATGACAAATCTTTTTTTGAGCAAACATAAAGTAGTTTCTGTTCAGTGCTGTGAGTGAAAAGCTGATTTTGACTTAATGAGGAATGCTAGTTTTGCTGAAGGGAGAATTAGCTTAGAAATATGACTGCTCTCTTCAGTAGGGGAGCGTACAGGGAATGCTAGCCCAGGCCTTGCTAGATACTTGAGTGGTAAGAGTGGAGGGACACTTTCAAGAAGTAATAAAACTTTTAAGCCGAAAAATTCTGTTCTTAAAGGTAAGTTTAAAGTGGCAGGCTTGCACTGTGGATGAGCTGGGTAAAACATTTTCGATGGTTCAAGAAATGTGGATGGTTGAAACAGTACTGCCGTCTTGCATTTCACCTGATGGTGTGACTGGAGGATTAATTAGACCTCAAGGAAAATGGCTGATGTGTGACCAGGCAGACTTGCAGTAGTTGTCGTACACCAAGTTTCTTCCTCTTCCTGGAAGACTTGTGCTGTGTGTGATGCTTCAGATAGCATGGTTGTTAAACAAATTTCTGAAAGAACAAGAAGACTTGAGTGTCAAGAGTACGAAAGGCCTCTGTACAAAGATCTTGTTGTCTGAATCCAGTTAACATAGCTATCCCAGTACAGCCAGTGTGAAGATCTTAACCAACTGACTAACTCTTCCAAGTAACTTTTGGAACATTCCTAGTAATTATGTTAAGTGCCAGCAAAAGGGAAGTGCTTTTGGAGCTGTTTTTACTACCAATTTAAAGGCTGACTGAATTGACCCAGGATGGCACTAAAATTGGTCCTGCACAGCACAGACAAATAACTGGAGCCTTCTATGCTGATGCAGTCTTGTACATCTCAAATGACTTTGTTCTGGGCTTTTTGTAGGCAGTGGTATTCTCAACTGACATGGACATAGCTGTCTGTGGCAACTATGTAGGGTTATGAATTACTCTGAAGTAAATGGAGAGAATTAAAGGAGGGAAATGAGTAAATGTACTGAATTAGGTTACACTGCTTGGTTAGTGGTTAAAATTGAGGCTCTTCTATACCACTTCTTGCTTTGGAGCTTGGAGCTGAAGAGCACTGCAGGAAAAGTGAGAGGGTGTCAGCTGGTTGTGCAGTGCTCACTACAATAGCAGTACTGCTGGAGGACACACAGAGCACATGGAGTTGAGTTTGATTACTGGCCTTCCCCGAGGAGGGGAAGAGCTTGGTTTATGGCAGCAGGAGCTTCTTATGGGCTAGAAGAAGGTGTTCTCCAAAAGAGTTTGCTCCTTCTGTTGTTACAGTTCTACGTCACAGATAACGGGCAAAGCATTTGCGGGTCCTGGTCTGAGTCACTCTTCTTATATCCCATATTCTTTCTATTGATTTTTCCTTTCTTTTCCCTCCATGCTTCAGAGGAATCCCAGGAAGGTAAGAAGTTGCTGGCAATCAGATTTGTCTGAACTTTGCTTTATCTACTGCCTTTTGAGAGCCACGTTTCCTAACAGCTCAATTCGTGTTCTAGGTGTTTTTCAAACTCTTTGAAGTCCTTAGATGCCGAACAATTCGCCGTGCTCTTACATCAGTGCCACGACAGCGACTCTCATCCAACAATAACAAGAAGAAAAACTAGCCAGTATTTTTAACTTTCTTTCTGTATCTGAAGTGTTCACAACTTACACATATAGGACAATAAGCTGGACTGTCTGGGCCGGTCTGCATAAATGCTGTAACCATACCAGACTGATGCTGCATATAGGGTATGGAATTGCACATCCACCTTCTAGGAACTGTAAAGTGGCTTGAAATCAGAGAAATACTGCTGTGTAGGAGGGATATCACTTGTGTTCATAGCATGTGACTGATTTAACCTCATCAGTGTAGCAGCAAAACTCATCTATTTCAGTTCATGCCAGTTTGTGTCAGACTTCAGCATTCCAGATTTTTCCATTATTTCAAGTCTCATCTTTTTGTATGTTTTTTATATTTTATTTTCTTTGGTTACCTCATTTTTTTGTTTCTTTGCACGTTTCTCATTCCACAG
Seq C2 exon
GTGTTGAAGCCCATGAGTGATAATTTGGTGGAGGATCATATGAGGCAGTCTGTTAGAAACTCTATCAAAGCAGGCCTGACCGAGCAGGTGTCTCACCATGCCAGACTAAAGACAGACTGACAGTACATCTCCTCTTCAACTCTGCCCTCTCATCCTAGACATGCTTGCTGTACCATGAGAACTCAATAAAAAGAAAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTGACTGGCTTCACAGATTGCTGCCATCACCTGGGGAGAGGAGGTTTGTCAAGTGCTCAGCTTCCGAGACAAACTGGTGCCATGGAGACGGGGGGTGGGCGGGAGGGGTGTGTGTTTTTAAGCGTAGTCCTGGTGAACCGTGCATGTGTGCGTTTTGGGGTGTGTGTGGGGGAGGGATCTCCCCCTGTGTTTGAGTTGATGCAGCGTCTGGCTTACAATGGGAGCCCGTCCTCTGCAGGAGATAACTTCAGGGAAGTGACGATCAGACCACGTAAAGGGTGCTGTGCTGTCCCCAGATGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515:ENSGALT00000013868:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(6.8=11.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]