RnoEX0012782 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2606591-2610437:+
Coord C1 exon
chr6:2606591-2607022
Coord A exon
chr6:2608714-2608945
Coord C2 exon
chr6:2609228-2610437
Length
232 bp
Sequences
Splice sites
3' ss Seq
TCACTCACTCCGTGTTTTAGGTG
3' ss Score
10.05
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
GTATGTGGTGGCGACAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGTGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTCATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGCACCCCCGCCACACTGTTCGCAGTCATGTTTGCTATGTACATAATCTCAGGACTGACCGGCTTCATCGGCCTGAACTCTATAGCTGTCTTATGCAACCTTGTCATGGGGCTGGCACTGACCTCCCTGTGTACGTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATTGGAACAATGATTGATCAGGTTGCTGAAACACTATGGGAACAG
Seq A exon
GTGTTTTCCAAACTGTTTGAAGTCACTAGACGTCGAATGGTTCATCATGCTCTTTCATCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACTTTTTCTCTATCTGAAGTGTTCACACTTATACACATAGGACAATAAGCAGGACCGTGTGGGCCGGTCTGCATAATGCTGTGTACATACCAGATTTGATGCTGCACATAGG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCCGATTAAAGACAGACTGACAGCTCATCTCCTCACGGACTCCCTTGTTCATGCTTGCTGTACAATGAGAACTCAGATAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGCTTAGTGTAACTGGCCTCACAGATGGCTGCCACAGAGTGTGAACATTGTTTGTTGGTTTTCAGCCTTCTTTTGATGTCTCCTCAGACCGGCGATTGGCTGAGGAGCGTTAGTTTATCATGCACATTTGTGCCATGTTTAATTCTTTTCTTTCTTTTTACTGAATTTAATGTTAGTGAAATTTGTCTTATGTAAAAGGATATTTCAGGGAAATATTTTAAGAAATCTATTTAGAGTCTCTTTAATATAGTGTCCCATTGAAATTTTAATTTTTAGAGAATTTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000008988fB1663
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCAGGACTGACCGGCTTC
R:
CGTGAGGAGATGAGCTGTCAG
Band lengths:
308-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]