MmuEX0006701 @ mm9
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:80247732-80250241:-
Coord C1 exon
chr17:80250227-80250241
Coord A exon
chr17:80249901-80250133
Coord C2 exon
chr17:80247732-80249618
Length
233 bp
Sequences
Splice sites
3' ss Seq
CACATCACTCCGTGTTTTAGGTG
3' ss Score
8.95
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
AGGAGTCCCAGGAAG
Seq A exon
GTGTTTGCCAAACTGTTTGAAGTCAGTAGACGTCGAAGGGTCCACCGTGCTCTCTCGTCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAGAAATTAGACAGGATTTTTAACTTTTTTCTCTATCTGAAGTGTTCACACTTACACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAATGCTGTATACATACCAGATTTGATGCTGCACATAGG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCCGATTAAAGACAGACTGACAGTTCATCTGCTCATGGACTCCACTCTCCCTTGTTCATGCTTGCTGTACAATGAGAACTCAGATAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTAACTGGCTTCACAGATGGCCGCCACAGAGTGTGAACGTTGTTTGTTGGTTTGCAGCCTTCTTTGCTGTCTCCTTAGACTCGGTGACTGCCTGAGGAGCATCAGGTTATCATGCACACTTGTGCCATGGTTAATTCTTTTCTTTCTTTTTACCGAATTCAATGTTAGTGAAATTTGTCTTATGTAAAAGGATATTTCAGGGAAATATTTTAAGAAATCTATTTAGAGTCTCTTTAATATAGTGTCCCATTGAAATTTTAATTTTTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811-'15-16,'15-15,16-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.293 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: