MmuEX0006701 @ mm10
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:79848392-79852956:-
Coord C1 exon
chr17:79852525-79852956
Coord A exon
chr17:79850561-79850793
Coord C2 exon
chr17:79848392-79850278
Length
233 bp
Sequences
Splice sites
3' ss Seq
CACATCACTCCGTGTTTTAGGTG
3' ss Score
8.95
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
GTATGCGGTGGTGATAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGAGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAATATCTTCTATGCTGCTCGCACCCCTGCCACACTGTTTGCAGTCATGTTTGCTATGTATATCATCTCAGGACTGACTGGCTTCATTGGCCTAAACTCTATAGCTGTCTTATGCAACCTCGTCATGGGGCTAGCACTGACGTCCCTTTGTACTTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATCGGAACAATGATTGATCAGATTGCTGAAACACTGTGGGAACAG
Seq A exon
GTGTTTGCCAAACTGTTTGAAGTCAGTAGACGTCGAAGGGTCCACCGTGCTCTCTCGTCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAGAAATTAGACAGGATTTTTAACTTTTTTCTCTATCTGAAGTGTTCACACTTACACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAATGCTGTATACATACCAGATTTGATGCTGCACATAGG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCCGATTAAAGACAGACTGACAGTTCATCTGCTCATGGACTCCACTCTCCCTTGTTCATGCTTGCTGTACAATGAGAACTCAGATAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTAACTGGCTTCACAGATGGCCGCCACAGAGTGTGAACGTTGTTTGTTGGTTTGCAGCCTTCTTTGCTGTCTCCTTAGACTCGGTGACTGCCTGAGGAGCATCAGGTTATCATGCACACTTGTGCCATGGTTAATTCTTTTCTTTCTTTTTACCGAATTCAATGTTAGTGAAATTTGTCTTATGTAAAAGGATATTTCAGGGAAATATTTTAAGAAATCTATTTAGAGTCTCTTTAATATAGTGTCCCATTGAAATTTTAATTTTTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811_MULTIEX1-3/3=C1-C2
Average complexity
ME(1-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000068282fB581
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCAACCTCGTCATGGGG
R:
ACAGCAAGCATGAACAAGGGA
Band lengths:
294-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types