HsaEX1005019 @ hg38
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr2:38294880-38296700:-
Coord C1 exon
chr2:38296686-38296700
Coord A exon
chr2:38296357-38296590
Coord C2 exon
chr2:38294880-38296113
Length
234 bp
Sequences
Splice sites
3' ss Seq
CAAATCACTTCATGTTTTAGGTG
3' ss Score
8.81
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
AGGAGTCCCAGGAAG
Seq A exon
GTGTTTTCCAAACTGTTTGAAGTTACTAGACGTCGAATGGTTCACCGTGCTCTTTCATCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAGACAGTATTTTTAACCTTTTTCTCTATCTGAAGTGTTCACACTTACACATGTAGGACAATAAGCAGGACCGTCTGGGCCGGTCTGCATAAATGCTGTATACATACCAGATTTGATGCTGCATATAGG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCAGATTAAAGACAGACTGACAGTTCATCTCCTCACGGACTCCACTCTCTTTTTTTTTCATGCTTGCTGTACAATGAGAACTCAAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTAACTGGCTTCACAGATGGCTGCCACAGAGTGTGAAGATTGTTTGTTAGTTTTAAGCATTCTTTTAATGGCTCCTAAGACATGCAGATGGACTGAGGAGCATTGGTTAATCATGCACCTTTGTGCCATGTTTAACTCTTTTATTTCTTTTTACTTAATCTAATGTTAGTGAATTTGTCTTATGTAAAAGGATATTTCAGGGAAATATTTTCAGAAATCTATTTAGAGTCTCTTTAACACAGTGTCCCATTGAAATTTTAATTTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787_MULTIEX3-3/3=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains