MmuEX0006704 @ mm9
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:80247732-80252296:-
Coord C1 exon
chr17:80251865-80252296
Coord A exon
chr17:80250227-80250241
Coord C2 exon
chr17:80247732-80249618
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCTTTTGCTTCAGAGG
3' ss Score
9.66
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTATGCGGTGGTGATAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGAGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAATATCTTCTATGCTGCTCGCACCCCTGCCACACTGTTTGCAGTCATGTTTGCTATGTATATCATCTCAGGACTGACTGGCTTCATTGGCCTAAACTCTATAGCTGTCTTATGCAACCTCGTCATGGGGCTAGCACTGACGTCCCTTTGTACTTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATCGGAACAATGATTGATCAGATTGCTGAAACACTGTGGGAACAG
Seq A exon
AGGAGTCCCAGGAAG
Seq C2 exon
GTATTGAAGCCCCTGGGTGATAATTTGATGGAGGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCCCGATTAAAGACAGACTGACAGTTCATCTGCTCATGGACTCCACTCTCCCTTGTTCATGCTTGCTGTACAATGAGAACTCAGATAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTTTAGTGTAACTGGCTTCACAGATGGCCGCCACAGAGTGTGAACGTTGTTTGTTGGTTTGCAGCCTTCTTTGCTGTCTCCTTAGACTCGGTGACTGCCTGAGGAGCATCAGGTTATCATGCACACTTGTGCCATGGTTAATTCTTTTCTTTCTTTTTACCGAATTCAATGTTAGTGAAATTTGTCTTATGTAAAAGGATATTTCAGGGAAATATTTTAAGAAATCTATTTAGAGTCTCTTTAATATAGTGTCCCATTGAAATTTTAATTTTTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(55.0=50.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAACACTGTGGGAACA
R:
GTCAGTCAGGCCTGCTTTGAT
Band lengths:
106-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: