DreINT0035664 @ danRer10
Intron Retention
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:45995496-45996970:+
Coord C1 exon
chr14:45995496-45995541
Coord A exon
chr14:45995542-45996929
Coord C2 exon
chr14:45996930-45996970
Length
1388 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCTTTCTCTCTGTTTTTAGTAT
3' ss Score
10.97
Exon sequences
Seq C1 exon
AAACGTCACAATGCTGATAATGTTGTCAACAAGAAAGAGACACAAG
Seq A exon
GTAAGGCTTTTGTTTGCTCACTGTTCTTTTTTTAAACTATACATTTGCATGATTTGCCTGTTTGGATGCCCATGAGTCATACCTGTCAACCCTTCCCTTTTGCTGGGTATGGCAAACGGTATTCCGTTTCTTTACATGCCAATGTTGACAGTACAATATGAGTTGTCAGTGTACATCAGTTATAAAACATGAGACATCAAAACAAAATGTATTTCTGCTTTAATTTTGACTTTAGAATATGTGCTGTTTAATTTGTTTTATTTATAGCAATATTATGATGAAAAAATATCACTTATCCTTTTAATTTAGGCGCATAAAAAAAATTAGTTTGGTTTTGTCCTGTTTCTAGCTTAATAGAAATATAAAAAAAACTTAAAGAAGCATTTTTTAGCAGTTAAAATTATTATGCTTATTACATAAACCATTGGTTGATTACTAGCTATTTTGTTTTTTGCCATCTTTGCGTAGAATTAATAACTAAATTAATTAATAATAAATTTTATAAAAATGTTTGGGTTTTTGCGGGAAAATTTTAAGAGAATAGGAACTGAAAGTGTAACAAGTAGCATCAAAAAAAAATGTAAAAAAAAACATGTAAAAAAATGAGTATATACAGTTTCTTGTAGATTTCCGCATTCTTAGTTCTGTTTACTGATTTCTTTGCTTGTTTTTAATACACTTATTTTTTTACTTATTTATCTGAAAACAATACAATATTTTTTTTTACCTGTCTTGGAAATGATTCTTGGTTTAAGAATTTTTTAGACTAGAAAGAAGACAAAACCTAGTAAGATTTTTTTTTAATTAATTAAATTTTTTTTGCAGTGAGTATGCATTATTTAAAGCATAGGATATAATGAATCTAGTATTTCAATTTGAAATAAGTAATGATGCTACTCTGAATGATGATGAAACATTATTTTACCACTATTTGACATTTGAAAGATACTTAAAACATTAAAGTGGCCCCTAGATTGCCTTTTTGTACACCCCCTGACAACAGTCTTGTCGTAAGTGTTGTAAGAGCAACAAATAATAACTTTACATTACATTATTCCTGTTAAATGACAAGACTTTTGTCTAGGCATTGTCAGACCTTACTATCCTAATGAAATAATTACAAATCAAGGCATGATCATATTTTATTTGGTAAAATAAGCGTAATCTAGAGCCCTTTACCTTTCAAATAAGCCACTTCTGATACCAAATGATCCACTAGAAGTCAAGTTATGATTTGTTGTTCCTTAAACTTGAATAGGCGACAACTTCTGTCAAGTAGTGTAGATGTAATTTAAGACAGACACTAACATGCTTCATTCAAAGATGATCTCAGGAATTCATGTGCACCACATTTCCTGACTTTTCTCTCTCTTTCTCTCTGTTTTTAG
Seq C2 exon
TATTGAGGAACGGCGCCTGGGAGATTGTGCACTGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001:ENSDART00000091620:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(20.3=100),PF121483=DUF3590=FE(26.8=100),PF132751=S4_2=PU(17.1=37.5)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(17.6=100),PF121483=DUF3590=FE(23.2=100),PF132751=S4_2=FE(37.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]