DreINT0036233 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:215576-216000:-
Coord C1 exon
chr11:215892-216000
Coord A exon
chr11:215687-215891
Coord C2 exon
chr11:215576-215686
Length
205 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTTGTGTGTTTAATCTTCAGGTG
3' ss Score
9.49
Exon sequences
Seq C1 exon
CTATAAGTCAGGTGGAGTGGCTTCAGGGATGAACCATGTGGAGACCAACACTTATAACATCCAGAGACTGCTGCACGTGAAGGGACGCAGGAAAGTGACCGGCACAGAG
Seq A exon
GTGAGGGACGCCATCATCTTATAGACCATACACCCGCTCTGATGTGCTGACTTCAGGCTGATGCTTCTCAAATACATTCATCAAGCTGAGTCTGTCATCAAGCTTTCCTGTAGACCTTGAAGCAGACTCCTCATGTGAGATGCAGTGGGCTGTTCAGGCAGTGTTTCTCACAGTATAATGGTCCAGTTGTGTGTTTAATCTTCAG
Seq C2 exon
GTGGAGGTGAGCTGGAAGAGCTTCGACACAGGCAGTGTGTTTCTGCTGGATCTGGGAAAGACCATTATCCAGTGGAACGGGCCGGAAAGCAACACACAGGAGCGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(6.8=13.5)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATAAGTCAGGTGGAGTGGCT
R:
CTTCAGACGCTCCTGTGTGTT
Band lengths:
220-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]