MmuINT0022344 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126444597-126444906:+
Coord C1 exon
chr10:126444597-126444705
Coord A exon
chr10:126444706-126444795
Coord C2 exon
chr10:126444796-126444906
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTGACTGCTCACACGCAGGTG
3' ss Score
6.94
Exon sequences
Seq C1 exon
CTATAAAAAGGGGGGTGTGGCCTCTGGGATGAAGCACGTGGAGACCAACACCTATGATGTGAAGAGGCTGCTACACGTAAAGGGGAAAAGAAACATCCAAGCCACGGAG
Seq A exon
GTGAGTCTCACACGTGAGTGTCCTGGGTGCCCGGTGCTCCCGCCCTGGCACCTAAGACTGCCCCGAACCGCTCTGACTGCTCACACGCAG
Seq C2 exon
GTGGAAATGAGCTGGGACAGCTTTAACCGAGGCGATGTCTTCCTGCTGGACCTTGGGATGGTCATCATCCAGTGGAATGGCCCGGAGAGCAACAGTGGGGAACGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(8.0=16.2)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATGAAGCACGTGGAGA
R:
GGGCCATTCCACTGGATGATG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: