RnoINT0024215 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70298551-70298857:+
Coord C1 exon
chr7:70298551-70298659
Coord A exon
chr7:70298660-70298746
Coord C2 exon
chr7:70298747-70298857
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTCTGGCCTCTCCCATGCAGGTG
3' ss Score
10.82
Exon sequences
Seq C1 exon
CTATAAAAAGGGGGGTGTGGCCTCTGGGATGAAGCATGTGGAGACCAACACCTATGATGTGAAGAGGCTGTTACATGTGAAGGGGAAAAGAAACATCAGAGCCACTGAG
Seq A exon
GTAAGTCCCACACATGACTGTCTGGGCCCAGTGTTCCTGCCCTGGCCCCTAAGACCACCTCAAACAGCTCTGGCCTCTCCCATGCAG
Seq C2 exon
GTGGAAATGAGCTGGGACAGTTTTAACCAAGGTGATGTCTTCTTGCTGGACCTCGGGATGGTCATCATCCAGTGGAATGGCCCGGAGAGCAACAGTGGGGAACGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(8.0=16.2)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGGATGAAGCATGTGG
R:
GGGCCATTCCACTGGATGATG
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]