GgaINT1029670 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22036596-22036941:-
Coord C1 exon
chr7:22036833-22036941
Coord A exon
chr7:22036707-22036832
Coord C2 exon
chr7:22036596-22036706
Length
126 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCCACTCTGTCCTGCTGCAGGTG
3' ss Score
10.73
Exon sequences
Seq C1 exon
CTATAAGCAGGGTGGGGTGGCCTCAGGCATGAAGCACGTGGAGACCAACACCTACAACGTCCAGCGCCTGCTGCATGTGAAGGGCAAGAAGAACGTGGTGGCTGCAGAG
Seq A exon
GTGAGATAGGGGATGTGGTCACCCCATAAAGCCCCAAGCAGAACAGGGAGGAGGAGCGCAGACCCTGGTGAGAGGGTTGCTGAGCAGGGGCAGTGTGTGTGCCTGACCCACTCTGTCCTGCTGCAG
Seq C2 exon
GTGGAGATGAGCTGGAAAAGCTTCAACCTGGGCGATGTCTTCCTGCTGGACCTTGGCCAGCTCATCATCCAGTGGAACGGCCCTGAGAGCAATCGTGCTGAAAGGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(8.0=16.2)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATAAGCAGGGTGGGGTGGC
R:
CCTCAGCCTTTCAGCACGATT
Band lengths:
220-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]