RnoINT0162866 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81699602-81699941:+
Coord C1 exon
chr9:81699602-81699710
Coord A exon
chr9:81699711-81699830
Coord C2 exon
chr9:81699831-81699941
Length
120 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AACTTCCCCATGCCCTCTAGGTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GATCCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCACGTAGAAACAAACTCCTGTGATGTCCAGCGACTGTTGCACGTCAAGGGCAAGAGGAATGTGCTGGCTGGAGAG
Seq A exon
GTGGGTCCCCAGTTGGGACCCTGGCTAAGAACTGCATGGGGCAGAGGGAAGGGAGGGTGGCTGGAGACGAGGCTGATGTGTAGGCTCTCCGTGGGCTCTGAACTTCCCCATGCCCTCTAG
Seq C2 exon
GTGGAAATGTCCTGGAAGAGTTTCAACAGAGGGGATGTCTTCCTGCTGGACCTTGGGAAGCTTATCATCCAGTGGAATGGGCCAGAGAGTAACCGCATGGAGAGACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(8.0=16.2)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCGGAAAGGGGGCGT
R:
CGAAGTCTCTCCATGCGGTTAC
Band lengths:
219-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]