HsaINT0180193 @ hg19
Intron Retention
Gene
ENSG00000127831 | VIL1
Description
villin 1 [Source:HGNC Symbol;Acc:12690]
Coordinates
chr2:219292688-219293060:+
Coord C1 exon
chr2:219292688-219292796
Coord A exon
chr2:219292797-219292949
Coord C2 exon
chr2:219292950-219293060
Length
153 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCTCCCCTGTGGCTCCCTAGGTA
3' ss Score
11.33
Exon sequences
Seq C1 exon
GATCCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCACGTGGAGACCAACTCCTATGACGTCCAGAGGCTGCTGCATGTCAAGGGCAAGAGGAACGTGGTAGCTGGAGAG
Seq A exon
GTAGGCAGGCCCCACTGGAGCATCGGCCAGGGCTGTGAGGCCCAGGGTGGAGGGCAGGGGCTGAGGAGGGGTGAGGGGCAGGGAGGGATGGCCAAGATGATGGATGATAGGTGAGCTCTGAGTGGGGTCTGTGCCTCCCCTGTGGCTCCCTAG
Seq C2 exon
GTAGAGATGTCCTGGAAGAGTTTCAACCGAGGGGATGTTTTCCTCCTGGACCTTGGGAAGCTTATCATCCAGTGGAATGGACCGGAAAGCACCCGTATGGAGAGACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127831-VIL1:NM_007127:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(8.0=16.2)
A:
NA
C2:
PF0062617=Gelsolin=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCGGAAAGGGGGCGT
R:
TGAGTCTCTCCATACGGGTGC
Band lengths:
218-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)